Factsheet for VIT_08s0040g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g02020.t01	Wine grape	cytosol	97.76	97.98
GSMUA_Achr6P16040_001	Banana	cytosol	85.01	97.19
GSMUA_Achr6P08450_001	Banana	cytosol	83.89	96.9
KRG95065	Soybean	plasma membrane	97.54	96.89
KRH66728	Soybean	nucleus	96.87	96.44
Bra008903.1-P	Field mustard	cytosol	96.64	96.43
AT5G12250.1	Thale cress	cytosol	96.2	95.77
VIT_02s0025g03680.t01	Wine grape	cytosol	95.75	95.75
VIT_16s0050g00380.t01	Wine grape	cytosol	95.53	95.1
VIT_17s0000g02450.t01	Wine grape	cytosol	94.63	95.06
VIT_08s0007g01630.t01	Wine grape	cytosol	94.18	94.18
VIT_10s0003g05320.t01	Wine grape	cytosol	93.74	94.16
VIT_06s0004g05870.t01	Wine grape	cytosol	93.74	93.95
CDX69693	Canola	cytosol	96.64	93.71
VIT_18s0001g14360.t01	Wine grape	cytosol	93.74	93.53
VIT_02s0025g03540.t01	Wine grape	cytosol	91.72	92.34
CDX97180	Canola	cytosol	96.64	89.81
VIT_00s0373g00010.t01	Wine grape	cytosol	32.89	45.65
VIT_14s0108g00440.t01	Wine grape	cytosol	43.18	42.89
VIT_03s0088g00380.t01	Wine grape	cytosol	42.95	42.67
VIT_18s0001g08250.t01	Wine grape	cytosol	42.95	42.57
VIT_06s0004g00480.t01	Wine grape	cytosol	42.73	42.54
VIT_08s0007g07260.t01	Wine grape	cytosol	41.61	41.7
VIT_00s1322g00010.t01	Wine grape	cytosol	23.94	38.91
VIT_15s0046g01350.t01	Wine grape	cytosol	34.45	32.49

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100244729	wikigene:100244729	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
UniProt:A5ATG8	EMBL:AM434940	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CAN64894	ProteinID:CAN64894.1
ProteinID:CCB57123	ProteinID:CCB57123.1	ncoils:Coil	EMBL:FN596008	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100244729	wikigene:LOC100244729	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF106	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC56576
TIGR:TC68215	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000151F53D	ArrayExpress:VIT_08s0040g00980	EnsemblPlantsGene:VIT_08s0040g00980
EnsemblPlants:VIT_08s0040g00980.t01	unigene:Vvi.14633	unigene:Vvi.6402	unigene:Vvi.81	RefSeq:XP_002283056	RefSeq:XP_002283056.1
SEG:seg	:	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A5ATG8]

Coordinates

chr8:+:11972184..11976303

Molecular Weight (calculated)

50249.5 Da

IEP (calculated)

4.481

GRAVY (calculated)

-0.337

Length

447 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGTS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEVDYEDEE EEGLEPM

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.