Factsheet for GSMUA_Achr6P16040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	3.07	100.0
GSMUA_Achr3P23490_001	Banana	cytosol	89.77	94.1
GSMUA_Achr5P26680_001	Banana	cytosol	93.35	94.07
GSMUA_Achr5P00290_001	Banana	cytosol	94.37	93.89
GSMUA_Achr2P01410_001	Banana	cytosol	93.61	93.85
GSMUA_Achr8P07060_001	Banana	cytosol	93.35	93.83
GSMUA_Achr11P...	Banana	cytosol	81.07	90.57
GSMUA_Achr6P08450_001	Banana	cytosol	89.0	89.92
GSMUA_AchrUn_...	Banana	cytosol	83.12	89.29
GSMUA_Achr10P...	Banana	cytosol	97.44	89.23
GSMUA_Achr1P17290_001	Banana	cytosol	83.89	88.89
GSMUA_Achr3P18460_001	Banana	cytosol	86.96	88.08
GSMUA_Achr8P33350_001	Banana	cytosol	65.73	85.1
VIT_08s0040g00980.t01	Wine grape	cytosol	97.19	85.01
Bra008903.1-P	Field mustard	cytosol	96.93	84.6
GSMUA_Achr5P12310_001	Banana	cytosol	73.4	83.92
AT5G12250.1	Thale cress	cytosol	96.16	83.74
KRG95065	Soybean	plasma membrane	96.16	83.56
GSMUA_Achr6P04600_001	Banana	cytosol	90.03	83.22
KRH66728	Soybean	nucleus	95.4	83.07
CDX69693	Canola	cytosol	96.93	82.21
GSMUA_Achr4P11980_001	Banana	plasma membrane	93.35	81.84
GSMUA_Achr5P10720_001	Banana	cytosol	78.26	81.38
GSMUA_Achr4P05450_001	Banana	cytosol	58.06	80.78
GSMUA_Achr4P26250_001	Banana	cytosol	90.79	79.6
CDX97180	Canola	cytosol	96.93	78.79
GSMUA_Achr5P21740_001	Banana	cytosol	94.88	73.76
GSMUA_Achr6P19990_001	Banana	cytosol	74.17	70.05
GSMUA_Achr8P15410_001	Banana	cytosol	23.79	39.08
GSMUA_Achr6P29670_001	Banana	cytosol	21.48	37.84
GSMUA_Achr7P17960_001	Banana	cytosol	37.34	36.78
GSMUA_Achr5P14830_001	Banana	cytosol	39.64	36.13
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	41.43	36.0
GSMUA_Achr7P01800_001	Banana	cytosol	36.83	35.56
GSMUA_Achr6P00620_001	Banana	cytosol	29.67	35.26
GSMUA_Achr2P17250_001	Banana	cytosol	29.41	34.95
GSMUA_Achr7P08080_001	Banana	cytosol	27.88	34.71
GSMUA_Achr1P14750_001	Banana	cytosol	35.81	29.29

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	ncoils:Coil
InterPro:Epsilon_tubulin	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G16040_001
EnsemblPlants:GSMUA_Achr6P16040_001	EnsemblPlants:GSMUA_Achr6T16040_001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0T7F2
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01519	ScanProsite:PS00227	ScanProsite:PS00228
PANTHER:PTHR11588	PANTHER:PTHR11588:SF106	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00029548D8	SEG:seg	:	:

Description

Tubulin beta-2 chain [Source:GMGC_GENE;Acc:GSMUA_Achr6G16040_001]

Coordinates

chr6:-:10707863..10710193

Molecular Weight (calculated)

43841.7 Da

IEP (calculated)

4.386

GRAVY (calculated)

-0.394

Length

391 amino acids

Sequence
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVVCDEHGI DPTGRYTGTS DLQLERVNVY YNEASCGRYS GAGNNWAKGH YTEGAELIDS VLDVVRKEAE NCDCLQGFQV
101: CHSLGGGTGS GMGTLLISKI REEYPDRMML TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN ADECMVLDNE ALYDICFRTL KLTTPSFGDL NHLISATMSG
201: VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF FMVGFAPLTS RGSQQYRALT VPELTQQMWD AKNMMCAADP RHGRYLTASA MFRGKMSTKE VDEQMINVQN
301: KNSSYFVEWI PNNVKSSVCD IPPRGLSMAS TFIGNSTSIQ EMFRRGMDEM EFTEAESNMN DLVSEYQQYQ DATADEEGDY EDEEEEIPQE M

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.