Factsheet for GSMUA_Achr6P00620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P17250_001	Banana	cytosol	94.83	94.83
GSMUA_Achr7P08080_001	Banana	cytosol	88.75	92.99
GSMUA_Achr8P15410_001	Banana	cytosol	66.26	91.6
GSMUA_Achr6P29670_001	Banana	cytosol	57.75	85.59
VIT_00s0373g00010.t01	Wine grape	cytosol	82.67	84.47
GSMUA_Achr7P17960_001	Banana	cytosol	82.67	68.51
GSMUA_Achr7P01800_001	Banana	cytosol	81.46	66.17
GSMUA_Achr5P14830_001	Banana	cytosol	81.16	62.24
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	81.16	59.33
OQU78051	Sorghum	cytosol	56.23	45.79
GSMUA_Achr4P05450_001	Banana	cytosol	36.17	42.35
GSMUA_Achr8P33350_001	Banana	cytosol	34.95	38.08
GSMUA_Achr5P12310_001	Banana	cytosol	33.13	31.87
GSMUA_Achr6P19990_001	Banana	cytosol	39.82	31.64
GSMUA_Achr3P18460_001	Banana	cytosol	37.08	31.61
GSMUA_Achr6P08450_001	Banana	cytosol	37.08	31.52
GSMUA_Achr10P...	Banana	cytosol	40.73	31.38
GSMUA_Achr1P17290_001	Banana	cytosol	34.95	31.17
GSMUA_Achr3P23490_001	Banana	cytosol	34.95	30.83
GSMUA_Achr6P04600_001	Banana	cytosol	39.51	30.73
GSMUA_Achr4P11980_001	Banana	plasma membrane	41.03	30.27
GSMUA_AchrUn_...	Banana	cytosol	33.43	30.22
GSMUA_Achr8P07060_001	Banana	cytosol	35.56	30.08
GSMUA_Achr2P01410_001	Banana	cytosol	35.56	30.0
GSMUA_Achr6P16040_001	Banana	cytosol	35.26	29.67
GSMUA_Achr5P26680_001	Banana	cytosol	34.95	29.64
GSMUA_Achr5P00290_001	Banana	cytosol	35.26	29.52
GSMUA_Achr4P26250_001	Banana	cytosol	39.82	29.37
GSMUA_Achr11P...	Banana	cytosol	31.0	29.14
GSMUA_Achr5P10720_001	Banana	cytosol	33.13	28.99
GSMUA_Achr5P21740_001	Banana	cytosol	40.73	26.64
GSMUA_Achr1P14750_001	Banana	cytosol	34.04	23.43
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

MapMan:20.1.1.1	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G00620_001
EnsemblPlants:GSMUA_Achr6P00620_001	EnsemblPlants:GSMUA_Achr6T00620_001	InterPro:IPR036525	UniProt:M0T310	PFAM:PF00091	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000296F4C9	SEG:seg	:	:	:	:

Description

Tubulin alpha chain [Source:GMGC_GENE;Acc:GSMUA_Achr6G00620_001]

Coordinates

chr6:+:414089..416325

Molecular Weight (calculated)

35720.4 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.135

Length

329 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPMWCPRT STLPLRPSRP SGPSSSSTGV
301: RLASNAASTT SRPASFPAAI WPRCSGRCA

Best Arabidopsis Sequence Match ( AT4G14960.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEKENS QRLVRILQHW
401: RRIMKRSVLK VVTMRMMKER NTKKNVS

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.