CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37669	Sorghum	cytosol	72.28	64.75
KXG37668	Sorghum	cytosol	72.28	64.75
EER93374	Sorghum	cytosol	68.32	61.33
KXG36544	Sorghum	cytosol	68.32	61.33
VIT_00s0373g00010.t01	Wine grape	cytosol	47.52	59.63
GSMUA_Achr7P08080_001	Banana	cytosol	46.04	59.24
EER92631	Sorghum	cytosol	65.59	59.15
GSMUA_Achr2P17250_001	Banana	cytosol	46.04	56.53
GSMUA_Achr6P00620_001	Banana	cytosol	45.79	56.23
EES04582	Sorghum	cytosol	34.16	30.94
EER90205	Sorghum	cytosol	34.16	30.94
EES01623	Sorghum	cytosol	33.91	30.65
KXG32297	Sorghum	cytosol	33.66	30.49
EER93354	Sorghum	cytosol	33.42	30.34
EER95686	Sorghum	cytosol	33.17	30.04
EER93713	Sorghum	cytosol	32.43	29.44
OQU78011	Sorghum	cytosol	27.97	26.46
EES19069	Sorghum	cytosol	27.23	23.45

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.40.50.1440	MapMan:35.1	UniProt:A0A1Z5R3M8	InterPro:Alpha_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	EnsemblPlants:OQU78051	ProteinID:OQU78051
ProteinID:OQU78051.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	PANTHER:PTHR11588
PANTHER:PTHR11588:SF101	SMART:SM00864	SMART:SM00865	EnsemblPlantsGene:SORBI_3009G145350	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000B8BA404	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:50241100..50247431

Molecular Weight (calculated)

45158.3 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.150

Length

404 amino acids

Sequence
(BLAST)

001: MRECILIHID QAGIQVGNAC WELYCLEHGI QITIHSFPLP GDDAFNTFFS EAGAGKHVPR AVFVDLEPTM IDEVRTSTYR QLFHHEQLIS GMEDAANNFA
101: HGHYTIGKEI VDLRLDRIKK LANNCIVGGT GLGLGSLLLE RLSVDCGKKS KLGFTVYPSP QLATSVVEPY NSHTDVAILL DNEAIYEICH RSLDMERPTY
201: TNLNRLCDPR HGKYIAYCLM YHGDVVPKNV NVVVATIKTK HTIQFVDWCP TGVVPGGDLA KVQRVVCMIS NSTSVVEVFS CIDHKFDLMY AKRAFVQWYV
301: GEGMEEGEFS EAREDLVALE KDYEEVGAEF DENLSRESKG HKVVGALNIG HHAISTARIR ISTQKMLGHA FFNIELTITR KQKLQLKDPN HSGPRAATPL
401: EPLM

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.