CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013159_P001	Maize	cytosol	99.11	99.11
TraesCS5D01G417700.1	Wheat	cytosol	92.67	92.46
KRH58181	Soybean	nucleus	92.44	92.44
TraesCS5B01G412700.1	Wheat	cytosol	92.44	92.24
TraesCS5A01G407800.1	Wheat	golgi	92.44	92.24
KXG37669	Sorghum	cytosol	92.44	92.24
KXG37668	Sorghum	cytosol	92.44	92.24
KRH28301	Soybean	cytosol, endoplasmic reticulum	91.78	91.57
KRH77187	Soybean	endoplasmic reticulum	91.78	91.57
GSMUA_Achr7P17960_001	Banana	cytosol	79.56	90.18
KXG36544	Sorghum	cytosol	87.33	87.33
EER92631	Sorghum	cytosol	85.11	85.49
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	92.44	83.53
OQU78051	Sorghum	cytosol	61.33	68.32
KXG32297	Sorghum	cytosol	41.56	41.93
EES04582	Sorghum	cytosol	41.56	41.93
EER90205	Sorghum	cytosol	41.33	41.7
EES01623	Sorghum	cytosol	41.33	41.61
EER93354	Sorghum	cytosol	40.89	41.35
EER95686	Sorghum	cytosol	40.89	41.26
EER93713	Sorghum	cytosol	39.78	40.22
OQU78011	Sorghum	cytosol	34.89	36.77
EES19069	Sorghum	cytosol	29.78	28.57

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:8083952	InterPro:Alpha_tubulin
UniProt:C5WZ62	ncoils:Coil	EnsemblPlants:EER93374	ProteinID:EER93374	ProteinID:EER93374.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864
SMART:SM00865	EnsemblPlantsGene:SORBI_3001G073700	SUPFAM:SSF52490	SUPFAM:SSF55307	unigene:Sbi.17841	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001A82C4B	RefSeq:XP_002466376.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:5604585..5607617

Molecular Weight (calculated)

49545.7 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.151

Length

450 amino acids

Sequence
(BLAST)

001: MRECISVHIG QAGIQVGNAC WELYCLEHGI QPDGQVPGDK TAGHHDDAFS TFFSQTGAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVE YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLDIE RPNYSNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISSAK AFHEQLSVAE ITSSAFEPAS
301: MMVKCDPRHG KYMACCLMYR GDVVPKDVNA AVAIIKTKRT IQFVDWCPTG FKCGINYQAP TVVPGADLAK VQRAVCMISN STSVVEVFSR INSKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVAAEGG GDDGEEDEEY

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.