Factsheet for Zm00001d013159_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93374	Sorghum	cytosol	99.11	99.11
Zm00001d013367_P001	Maize	plastid	92.89	92.68
Zm00001d033850_P003	Maize	cytosol	92.67	92.46
KRH58181	Soybean	nucleus	92.44	92.44
TraesCS5D01G417700.1	Wheat	cytosol	92.44	92.24
TraesCS5A01G407800.1	Wheat	golgi	92.22	92.02
TraesCS5B01G412700.1	Wheat	cytosol	92.22	92.02
KRH28301	Soybean	cytosol, endoplasmic reticulum	91.33	91.13
KRH77187	Soybean	endoplasmic reticulum	91.33	91.13
GSMUA_Achr7P17960_001	Banana	cytosol	80.0	90.68
Zm00001d021891_P001	Maize	cytosol	87.56	87.56
Zm00001d006651_P005	Maize	plasma membrane	87.33	87.33
Zm00001d048065_P002	Maize	cytosol, mitochondrion	84.44	84.82
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	92.22	83.33
Zm00001d040509_P001	Maize	cytosol	24.22	49.1
Zm00001d036626_P001	Maize	cytosol	23.11	45.81
Zm00001d008216_P002	Maize	cytosol	24.22	45.61
Zm00001d046996_P001	Maize	cytosol	23.11	45.02
Zm00001d034022_P001	Maize	cytosol	26.0	44.66
Zm00001d013139_P001	Maize	cytosol	28.89	44.37
Zm00001d015348_P002	Maize	plastid	41.11	41.67
Zm00001d027295_P002	Maize	plasma membrane	40.89	41.26
Zm00001d012556_P001	Maize	plastid	40.89	41.07
Zm00001d010275_P001	Maize	cytosol	26.67	40.27
Zm00001d033457_P001	Maize	plasma membrane	39.33	39.78
Zm00001d013612_P002	Maize	plasma membrane	39.11	39.37
Zm00001d043158_P001	Maize	plasma membrane	41.33	37.5
Zm00001d037582_P001	Maize	cytosol, extracellular	29.56	28.36
Zm00001d009780_P003	Maize	cytosol	30.0	26.68
Zm00001d013636_P001	Maize	nucleus, plastid	13.56	23.28
Zm00001d035567_P001	Maize	nucleus	12.89	23.2
Zm00001d026623_P001	Maize	cytosol, plastid	19.78	21.45

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:542395	ProteinID:AAA33518.1
ProteinID:AQK62578.1	ProteinID:AQK62580.1	InterPro:Alpha_tubulin	EMBL:BT088189	UniProt:C4JBJ2	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:P22275
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0000136988	EMBL:X63176	EnsemblPlantsGene:Zm00001d013159	EnsemblPlants:Zm00001d013159_P001	EnsemblPlants:Zm00001d013159_T001
SEG:seg	:	:	:	:	:

Description

alpha tubulin3 alpha tubulin3

Coordinates

chr5:-:5560312..5563194

Molecular Weight (calculated)

49563.6 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.163

Length

450 amino acids

Sequence
(BLAST)

001: MRECISVHIG QAGIQVGNAC WELYCLEHGI QPDGQVPGDK TAGHHDDAFS TFFSQTGAGK HVPRAIFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVE YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLDIE RPNYSNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISSAK AFHEQLSVAE ITSSAFEPAS
301: MMVKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQAP TVVPGADLAK VQRAVCMISN STSVVEVFSR INSKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVAAEGG SDDGDEEEEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.