Factsheet for Zm00001d048065_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92631	Sorghum	cytosol	98.66	98.66
TraesCS4A01G065700.1	Wheat	cytosol	96.43	96.21
TraesCS4D01G242700.1	Wheat	cytosol	96.21	95.99
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	96.21	95.99
HORVU4Hr1G067370.1	Barley	cytosol	96.21	95.99
TraesCS4B01G243100.1	Wheat	cytosol	96.21	95.99
KRH06693	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.52	92.55
CDY42294	Canola	cytosol	92.19	91.78
CDY42295	Canola	cytosol	92.19	91.78
Bra020062.1-P	Field mustard	cytosol	91.96	91.56
CDX70890	Canola	cytosol	91.96	91.56
CDX88875	Canola	cytosol	91.96	91.56
KRG94842	Soybean	cytosol, endoplasmic reticulum, mitochondrion	91.96	91.35
CDY44941	Canola	cytosol	91.74	91.33
CDY44942	Canola	cytosol	91.74	91.33
CDX92501	Canola	cytosol	91.52	91.11
CDX92502	Canola	cytosol	91.52	91.11
Bra002261.1-P	Field mustard	cytosol	91.52	91.11
Zm00001d021891_P001	Maize	cytosol	91.29	90.89
Bra006517.1-P	Field mustard	cytosol	91.29	90.89
Zm00001d006651_P005	Maize	plasma membrane	90.85	90.44
Bra020061.1-P	Field mustard	cytosol	90.4	90.0
Bra002260.1-P	Field mustard	cytosol	81.7	89.27
AT1G64740.1	Thale cress	cytosol	89.29	88.89
Zm00001d013367_P001	Maize	plastid	87.95	87.36
Zm00001d033850_P003	Maize	cytosol	87.72	87.14
VIT_08s0007g07260.t01	Wine grape	cytosol	84.82	85.2
Zm00001d013159_P001	Maize	cytosol	84.82	84.44
Zm00001d040509_P001	Maize	cytosol	23.88	48.2
Zm00001d036626_P001	Maize	cytosol	23.21	45.81
Zm00001d046996_P001	Maize	cytosol	23.44	45.45
Zm00001d034022_P001	Maize	cytosol	26.34	45.04
Zm00001d008216_P002	Maize	cytosol	23.88	44.77
Zm00001d013139_P001	Maize	cytosol	29.02	44.37
Zm00001d015348_P002	Maize	plastid	41.07	41.44
Zm00001d027295_P002	Maize	plasma membrane	40.85	41.03
Zm00001d012556_P001	Maize	plastid	40.62	40.62
Zm00001d010275_P001	Maize	cytosol	26.79	40.27
Zm00001d013612_P002	Maize	plasma membrane	39.29	39.37
Zm00001d033457_P001	Maize	plasma membrane	39.06	39.33
Zm00001d043158_P001	Maize	plasma membrane	41.29	37.3
Zm00001d037582_P001	Maize	cytosol, extracellular	31.25	29.85
Zm00001d009780_P003	Maize	cytosol	31.25	27.67
Zm00001d035567_P001	Maize	nucleus	13.62	24.4
Zm00001d013636_P001	Maize	nucleus, plastid	14.06	24.05
Zm00001d026623_P001	Maize	cytosol, plastid	20.76	22.41

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:AQL08615.1	InterPro:Alpha_tubulin
InterPro:Beta-tubulin_BS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0005874	GO:GO:0005886
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:K7VKH1	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF189	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002220A6B	EnsemblPlantsGene:Zm00001d048065	EnsemblPlants:Zm00001d048065_P002	EnsemblPlants:Zm00001d048065_T002	SEG:seg

Description

Tubulin alpha-1 chain

Coordinates

chr9:+:149248191..149254222

Molecular Weight (calculated)

49855.2 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.154

Length

448 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGLMPSDT SVGIARDAFN TFFSETGAGK HVPRALFVDL EPTVIDEVKT GAYRQLFHPE QLISHKEDAA
101: NNFARGHYTV GREVIDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGRKSKLGFT IYPSPQISTA VVEPYNSVLS THSLIEHTDV
201: VVLLDNEAIY DICKRSLDIE RPTYTNLNRL ISQVISSLTT SLRFEGAINV DITEFQTNLV PYPRIHFMLS SYAPIISVEK AYHEQHSVPE ITNSVFEPSS
301: VMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVHSIKTKRA VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDRKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEVE DEDEEAEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.