Factsheet for Zm00001d013139_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007600_P001
Zm00001d007720_P003
Zm00001d009423_P001
Zm00001d018478_P001
Zm00001d025839_P001
Zm00001d030574_P001
Zm00001d033260_P001
Zm00001d048892_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	Zm00001d018478_P001	AT2G30410.1	20638386
AT5G44340.1	Zm00001d007600_P001	AT3G50960.1	18390592
AT5G44340.1	Zm00001d007720_P003	AT3G50960.1	18390592
AT5G44340.1	Zm00001d009423_P001	AT3G50960.1	18390592
AT5G44340.1	Zm00001d025839_P001	AT3G50960.1	18390592
AT5G44340.1	Zm00001d030574_P001	AT3G50960.1	18390592
AT5G44340.1	Zm00001d033260_P001	AT3G50960.1	18390592
AT5G44340.1	Zm00001d048892_P001	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034022_P001	Maize	cytosol	87.71	98.09
Zm00001d036626_P001	Maize	cytosol	69.62	89.87
Zm00001d040509_P001	Maize	cytosol	67.92	89.64
Zm00001d046996_P001	Maize	cytosol	69.97	88.74
Zm00001d008216_P002	Maize	cytosol	69.28	84.94
Zm00001d010275_P001	Maize	cytosol	78.84	77.52
GSMUA_Achr6P19990_001	Banana	cytosol	93.52	66.18
EER93354	Sorghum	cytosol	98.98	65.17
TraesCS5D01G424100.1	Wheat	cytosol	97.95	64.49
TraesCS5B01G418700.1	Wheat	golgi	97.95	64.49
TraesCS5A01G416400.1	Wheat	cytosol	97.61	64.41
Os03t0780600-01	Rice	plastid	97.61	64.41
Bra005395.1-P	Field mustard	cytosol	88.4	64.27
KRH58404	Soybean	nucleus	95.22	63.12
KRH11812	Soybean	nucleus	95.56	62.78
KRH42279	Soybean	cytosol	94.88	62.75
CDY31638	Canola	cytosol	94.88	62.61
KRH36829	Soybean	nucleus	95.22	62.56
VIT_10s0003g05320.t01	Wine grape	cytosol	94.88	62.47
Zm00001d027295_P002	Maize	plasma membrane	94.88	62.33
Zm00001d015348_P002	Maize	plastid	94.2	62.16
CDX84283	Canola	cytosol	94.54	62.11
Zm00001d012556_P001	Maize	plastid	94.2	61.61
CDX98679	Canola	cytosol	93.52	61.44
CDX94014	Canola	cytosol	93.52	61.44
AT5G44340.1	Thale cress	cytosol	92.83	61.26
Bra020912.1-P	Field mustard	cytosol	93.17	61.21
CDY69221	Canola	cytosol	92.83	61.12
CDY49002	Canola	cytosol	92.83	61.12
CDX76444	Canola	cytosol	92.83	60.99
CDY31428	Canola	cytosol	92.83	60.99
Bra033737.1-P	Field mustard	cytosol	92.49	60.9
CDY60599	Canola	cytosol	92.49	60.9
AT4G20890.1	Thale cress	cytosol	92.15	60.81
CDX79013	Canola	cytosol	92.49	60.76
CDX82788	Canola	cytosol	92.49	60.76
Bra038795.1-P	Field mustard	cytosol	92.15	60.67
CDY13108	Canola	cytosol	92.15	60.67
CDX96965	Canola	cytosol	92.15	60.67
Bra027544.1-P	Field mustard	cytosol	92.15	60.67
CDY14924	Canola	cytosol	92.15	60.54
Bra039506.1-P	Field mustard	cytosol	92.15	60.54
Bra013481.1-P	Field mustard	cytosol	91.81	60.31
Zm00001d013612_P002	Maize	plasma membrane	90.78	59.51
Zm00001d033457_P001	Maize	plasma membrane	90.1	59.33
GSMUA_Achr8P07060_001	Banana	cytosol	76.45	57.58
GSMUA_Achr2P01410_001	Banana	cytosol	76.45	57.44
GSMUA_Achr5P26680_001	Banana	cytosol	75.43	56.96
GSMUA_Achr5P00290_001	Banana	cytosol	76.11	56.74
HORVU5Hr1G100900.2	Barley	cytosol	97.95	56.72
GSMUA_Achr3P23490_001	Banana	cytosol	70.65	55.5
Zm00001d043158_P001	Maize	plasma membrane	93.17	55.04
GSMUA_Achr11P...	Banana	cytosol	65.19	54.57
Zm00001d013367_P001	Maize	plastid	45.73	29.71
Zm00001d033850_P003	Maize	cytosol	45.73	29.71
Zm00001d048065_P002	Maize	cytosol, mitochondrion	44.37	29.02
Zm00001d013159_P001	Maize	cytosol	44.37	28.89
Zm00001d021891_P001	Maize	cytosol	44.03	28.67
Zm00001d006651_P005	Maize	plasma membrane	44.03	28.67
Zm00001d026623_P001	Maize	cytosol, plastid	37.88	26.75
Zm00001d037582_P001	Maize	cytosol, extracellular	37.88	23.67
Zm00001d009780_P003	Maize	cytosol	37.88	21.94
Zm00001d013636_P001	Maize	nucleus, plastid	9.9	11.07
Zm00001d035567_P001	Maize	nucleus	8.87	10.4

Protein Annotations

Gene3D:3.40.50.1440	MapMan:35.1	UniProt:A0A1D6GG78	ProteinID:AQK62555.1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR036525	PFAM:PF00091	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF146	SMART:SM00864
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0008450A4E	EnsemblPlantsGene:Zm00001d013139	EnsemblPlants:Zm00001d013139_P001	EnsemblPlants:Zm00001d013139_T001	SEG:seg

Description

Tubulin beta-4 chain

Coordinates

chr5:-:5342045..5344671

Molecular Weight (calculated)

32699.1 Da

IEP (calculated)

4.069

GRAVY (calculated)

-0.429

Length

293 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DATGRYAGDS DLQLERVNVY YNEASGGRFV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALGLK MAGTFVGNST SIQEMFRRVS EQFTAMFRRK AFLHWYTGEG MDEMEFTEAE SNMNDLVAEY QQYQDATADE EYEDEEEEEN VAE

Best Arabidopsis Sequence Match ( AT1G20010.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET

Arabidopsis Description

TUBB5Tubulin beta-5 chain [Source:UniProtKB/Swiss-Prot;Acc:P29513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.