Factsheet for HORVU5Hr1G100900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G007960.1
HORVU6Hr1G090650.2
HORVU7Hr1G029120.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	HORVU5Hr1G007960.1	AT2G30410.1	20638386
AT4G20890.1	HORVU6Hr1G090650.2	AT2G30410.1	20638386
AT5G44340.1	HORVU7Hr1G029120.1	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G424100.1	Wheat	cytosol	87.94	100.0
TraesCS5B01G418700.1	Wheat	golgi	87.94	100.0
TraesCS5A01G416400.1	Wheat	cytosol	87.35	99.55
Zm00001d013139_P001	Maize	cytosol	56.72	97.95
EER93354	Sorghum	cytosol	85.97	97.75
Os03t0780600-01	Rice	plastid	85.38	97.3
GSMUA_Achr11P...	Banana	cytosol	66.6	96.29
Zm00001d034022_P001	Maize	cytosol	49.8	96.18
GSMUA_Achr8P07060_001	Banana	cytosol	73.72	95.89
KRH11812	Soybean	nucleus	84.39	95.74
GSMUA_Achr2P01410_001	Banana	cytosol	73.72	95.64
HORVU6Hr1G027620.1	Barley	plasma membrane	84.19	95.52
KRH36829	Soybean	nucleus	84.19	95.52
VIT_10s0003g05320.t01	Wine grape	cytosol	83.99	95.51
CDY31638	Canola	cytosol	83.79	95.5
KRH58404	Soybean	nucleus	83.4	95.48
GSMUA_Achr3P23490_001	Banana	cytosol	70.16	95.17
GSMUA_Achr5P26680_001	Banana	cytosol	72.92	95.1
KRH42279	Soybean	cytosol	83.2	95.03
CDX84283	Canola	cytosol	83.6	94.84
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	83.4	94.62
GSMUA_Achr5P00290_001	Banana	cytosol	73.32	94.4
CDX94014	Canola	cytosol	82.41	93.5
HORVU1Hr1G068170.1	Barley	cytosol	82.41	93.29
HORVU0Hr1G026030.2	Barley	cytosol	82.41	93.29
CDX98679	Canola	cytosol	82.21	93.27
Bra020912.1-P	Field mustard	cytosol	82.21	93.27
CDY31428	Canola	cytosol	82.02	93.05
CDX76444	Canola	cytosol	82.02	93.05
AT5G44340.1	Thale cress	cytosol	81.62	93.02
AT4G20890.1	Thale cress	cytosol	81.62	93.02
Bra038795.1-P	Field mustard	cytosol	81.62	92.81
CDX79013	Canola	cytosol	81.62	92.6
CDX82788	Canola	cytosol	81.62	92.6
Bra027544.1-P	Field mustard	cytosol	81.42	92.58
CDX96965	Canola	cytosol	81.42	92.58
Bra039506.1-P	Field mustard	cytosol	81.42	92.38
CDY14924	Canola	cytosol	81.42	92.38
CDY69221	Canola	cytosol	81.23	92.36
CDY13108	Canola	cytosol	81.23	92.36
CDY60599	Canola	cytosol	81.23	92.36
CDY49002	Canola	cytosol	81.03	92.13
Bra033737.1-P	Field mustard	cytosol	81.03	92.13
Bra013481.1-P	Field mustard	cytosol	80.63	91.48
Bra005395.1-P	Field mustard	cytosol	69.96	87.84
GSMUA_Achr6P19990_001	Banana	cytosol	69.37	84.78
HORVU3Hr1G078940.1	Barley	mitochondrion	84.19	84.69
HORVU4Hr1G002530.2	Barley	cytosol	81.03	83.33
HORVU1Hr1G064870.3	Barley	mitochondrion	84.58	81.52
HORVU4Hr1G087740.1	Barley	cytosol	63.83	68.87
HORVU2Hr1G037560.2	Barley	cytosol	30.43	42.19
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	37.15	41.69
HORVU1Hr1G081280.1	Barley	cytosol	36.76	41.24
HORVU4Hr1G067370.1	Barley	cytosol	35.77	40.31
HORVU5Hr1G098960.2	Barley	cytosol, mitochondrion	37.55	38.15
HORVU2Hr1G037550.2	Barley	cytosol	33.6	37.61
HORVU2Hr1G037570.3	Barley	cytosol	32.02	36.49
HORVU1Hr1G023030.2	Barley	cytosol	31.23	33.69

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A287SHW0	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:HORVU5Hr1G100900	EnsemblPlants:HORVU5Hr1G100900.2	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF146	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000B46ABB8	SEG:seg	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A287SHW0]

Coordinates

chrchr5H:-:612228669..612231660

Molecular Weight (calculated)

56892.3 Da

IEP (calculated)

5.014

GRAVY (calculated)

-0.467

Length

506 amino acids

Sequence
(BLAST)

001: LWPAARNHRA RPSPNPKLEY KGPENTILHF EIRIPQSPRP ASQRATPLPR NHHRTPGEAA TMREILHIQG GQCGNQIGAK FWEVICDEHG IDGTGRYAGD
101: SDLQLERINV YYNEASGGRF VPRAVLMDLE PGTMDSVRSG PFGQIFRPDN FVFGQSGAGN NWAKGHYTEG AELIDSVLDV VRKEAENCDC LQGFQVCHSL
201: GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC MVLDNEALYD ICFRTLKLAT PSFGDLNHLI SATMSGVTCC
301: LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ MYRALTVPEL TQQMWDAKNM MCAADPRHGR YLTASACFRG KMSTKEVDEQ MLNVQNKNSS
401: YFVEWIPNNV KSSVCDMPPR GLKMAGTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEYDEEEE
501: EERDAE

Best Arabidopsis Sequence Match ( AT1G20010.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET

Arabidopsis Description

TUBB5Tubulin beta-5 chain [Source:UniProtKB/Swiss-Prot;Acc:P29513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.