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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3B01G363500.1 Wheat golgi, unclear 88.67 99.78
TraesCS3A01G333300.1 Wheat cytosol 88.87 99.11
Os01t0805900-01 Rice plasma membrane 87.48 98.43
KXG32297 Sorghum cytosol 86.48 97.53
TraesCS3D01G326900.1 Wheat plastid 96.62 97.39
PGSC0003DMT400072466 Potato cytosol 86.48 97.32
GSMUA_Achr3P18460_001 Banana cytosol 74.35 96.89
Solyc10g080940.1.1 Tomato nucleus 86.68 96.46
HORVU0Hr1G026030.2 Barley cytosol 85.49 96.2
HORVU1Hr1G068170.1 Barley cytosol 85.49 96.2
VIT_17s0000g02450.t01 Wine grape cytosol 84.49 95.51
HORVU6Hr1G027620.1 Barley plasma membrane 83.9 94.62
HORVU7Hr1G107100.2 Barley cytosol, nucleus 83.1 93.72
KRH41834 Soybean cytosol 82.31 93.03
KRH60536 Soybean endoplasmic reticulum 81.91 92.58
HORVU4Hr1G002530.2 Barley cytosol 82.7 84.55
HORVU1Hr1G064870.3 Barley mitochondrion 88.07 84.38
HORVU5Hr1G100900.2 Barley cytosol 84.69 84.19
HORVU4Hr1G087740.1 Barley cytosol 65.81 70.58
HORVU2Hr1G037560.2 Barley cytosol 31.21 43.01
HORVU4Hr1G009520.1 Barley cytosol, plasma membrane 37.97 42.35
HORVU1Hr1G081280.1 Barley cytosol 37.57 41.91
HORVU4Hr1G067370.1 Barley cytosol 36.38 40.76
HORVU5Hr1G098960.2 Barley cytosol, mitochondrion 37.97 38.35
HORVU2Hr1G037550.2 Barley cytosol 34.19 38.05
HORVU2Hr1G037570.3 Barley cytosol 32.21 36.49
HORVU1Hr1G023030.2 Barley cytosol 30.82 33.05
Protein Annotations
Gene3D:1.10.287.600MapMan:20.1.1.2Gene3D:3.30.1330.20Gene3D:3.40.50.1440UniProt:A0A287LTY0InterPro:Beta_tubulin
ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005198
GO:GO:0005200GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005856GO:GO:0005874GO:GO:0007010GO:GO:0007017GO:GO:0008150
GO:GO:0009987GO:GO:0016043GO:GO:0016787EnsemblPlantsGene:HORVU3Hr1G078940EnsemblPlants:HORVU3Hr1G078940.1InterPro:IPR023123
InterPro:IPR036525InterPro:IPR037103PFAM:PF00091PFAM:PF03953PRINTS:PR01161PRINTS:PR01163
ScanProsite:PS00227PANTHER:PTHR11588PANTHER:PTHR11588:SF241SMART:SM00864SMART:SM00865SUPFAM:SSF52490
SUPFAM:SSF55307InterPro:Tub_FtsZ_CInterPro:TubulinInterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_C_sfInterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_CInterPro:Tubulin_CSInterPro:Tubulin_FtsZ_GTPaseUniParc:UPI000B479B0FSEG:seg:
Description
Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A287LTY0]
Coordinates
chrchr3H:+:581094773..581098244
Molecular Weight (calculated)
56236.5 Da
IEP (calculated)
4.853
GRAVY (calculated)
-0.393
Length
503 amino acids
Sequence
(BLAST)
001: VGRRMPAAPP SAAYGYLTPT ALASLLPGHH TPSYSPRSPS RRRLFSLREP SHTSAKMREI LHIQGGQCGN QIGAKFWEVV CDEHGIDPTG RYTGTSDLQL
101: ERVNVYYNEA SCGRFVPRAV LMDLEPGTMD SVRTGPYGQI FRPDNFVFGQ SGAGNNWAKG HYTEGAELID SVLDVVRKEA ENCDCLQGFQ VCHSLGGGTG
201: SGMGTLLISK IREEYPDRMM LTFSVFPSPK VSDTVVEPYN ATLSVHQLVE NADECMVLDN EALYDICFRT LKLTTPSFGD LNHLISATMS GVTCCLRFPG
301: QLNSDLRKLA VNLIPFPRLH FFMVGFAPLT SRGSQQYRAL TVPELTQQMW DAKNMMCAAD PRHGRYLTAS AMFRGKMSTK EVDEQMINVQ NKNSSYFVEW
401: IPNNVKSSVC DIPPTGLSMA STFVGNSTSI QEMFRRVSEQ FTAMFRRKAF LHWYTGEGMD EMEFTEAESN MNDLVSEYQQ YQDATADEEG EYEDEDQEAE
501: DDM
Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Arabidopsis Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.