Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3B01G363500.1 | Wheat | golgi, unclear | 88.67 | 99.78 |
TraesCS3A01G333300.1 | Wheat | cytosol | 88.87 | 99.11 |
Os01t0805900-01 | Rice | plasma membrane | 87.48 | 98.43 |
KXG32297 | Sorghum | cytosol | 86.48 | 97.53 |
TraesCS3D01G326900.1 | Wheat | plastid | 96.62 | 97.39 |
PGSC0003DMT400072466 | Potato | cytosol | 86.48 | 97.32 |
GSMUA_Achr3P18460_001 | Banana | cytosol | 74.35 | 96.89 |
Solyc10g080940.1.1 | Tomato | nucleus | 86.68 | 96.46 |
HORVU0Hr1G026030.2 | Barley | cytosol | 85.49 | 96.2 |
HORVU1Hr1G068170.1 | Barley | cytosol | 85.49 | 96.2 |
VIT_17s0000g02450.t01 | Wine grape | cytosol | 84.49 | 95.51 |
HORVU6Hr1G027620.1 | Barley | plasma membrane | 83.9 | 94.62 |
HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 83.1 | 93.72 |
KRH41834 | Soybean | cytosol | 82.31 | 93.03 |
KRH60536 | Soybean | endoplasmic reticulum | 81.91 | 92.58 |
HORVU4Hr1G002530.2 | Barley | cytosol | 82.7 | 84.55 |
HORVU1Hr1G064870.3 | Barley | mitochondrion | 88.07 | 84.38 |
HORVU5Hr1G100900.2 | Barley | cytosol | 84.69 | 84.19 |
HORVU4Hr1G087740.1 | Barley | cytosol | 65.81 | 70.58 |
HORVU2Hr1G037560.2 | Barley | cytosol | 31.21 | 43.01 |
HORVU4Hr1G009520.1 | Barley | cytosol, plasma membrane | 37.97 | 42.35 |
HORVU1Hr1G081280.1 | Barley | cytosol | 37.57 | 41.91 |
HORVU4Hr1G067370.1 | Barley | cytosol | 36.38 | 40.76 |
HORVU5Hr1G098960.2 | Barley | cytosol, mitochondrion | 37.97 | 38.35 |
HORVU2Hr1G037550.2 | Barley | cytosol | 34.19 | 38.05 |
HORVU2Hr1G037570.3 | Barley | cytosol | 32.21 | 36.49 |
HORVU1Hr1G023030.2 | Barley | cytosol | 30.82 | 33.05 |
Protein Annotations
Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | UniProt:A0A287LTY0 | InterPro:Beta_tubulin |
ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 |
GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | EnsemblPlantsGene:HORVU3Hr1G078940 | EnsemblPlants:HORVU3Hr1G078940.1 | InterPro:IPR023123 |
InterPro:IPR036525 | InterPro:IPR037103 | PFAM:PF00091 | PFAM:PF03953 | PRINTS:PR01161 | PRINTS:PR01163 |
ScanProsite:PS00227 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF241 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 |
SUPFAM:SSF55307 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf |
InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI000B479B0F | SEG:seg | : |
Description
Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A287LTY0]
Coordinates
chrchr3H:+:581094773..581098244
Molecular Weight (calculated)
56236.5 Da
IEP (calculated)
4.853
GRAVY (calculated)
-0.393
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: VGRRMPAAPP SAAYGYLTPT ALASLLPGHH TPSYSPRSPS RRRLFSLREP SHTSAKMREI LHIQGGQCGN QIGAKFWEVV CDEHGIDPTG RYTGTSDLQL
101: ERVNVYYNEA SCGRFVPRAV LMDLEPGTMD SVRTGPYGQI FRPDNFVFGQ SGAGNNWAKG HYTEGAELID SVLDVVRKEA ENCDCLQGFQ VCHSLGGGTG
201: SGMGTLLISK IREEYPDRMM LTFSVFPSPK VSDTVVEPYN ATLSVHQLVE NADECMVLDN EALYDICFRT LKLTTPSFGD LNHLISATMS GVTCCLRFPG
301: QLNSDLRKLA VNLIPFPRLH FFMVGFAPLT SRGSQQYRAL TVPELTQQMW DAKNMMCAAD PRHGRYLTAS AMFRGKMSTK EVDEQMINVQ NKNSSYFVEW
401: IPNNVKSSVC DIPPTGLSMA STFVGNSTSI QEMFRRVSEQ FTAMFRRKAF LHWYTGEGMD EMEFTEAESN MNDLVSEYQQ YQDATADEEG EYEDEDQEAE
501: DDM
101: ERVNVYYNEA SCGRFVPRAV LMDLEPGTMD SVRTGPYGQI FRPDNFVFGQ SGAGNNWAKG HYTEGAELID SVLDVVRKEA ENCDCLQGFQ VCHSLGGGTG
201: SGMGTLLISK IREEYPDRMM LTFSVFPSPK VSDTVVEPYN ATLSVHQLVE NADECMVLDN EALYDICFRT LKLTTPSFGD LNHLISATMS GVTCCLRFPG
301: QLNSDLRKLA VNLIPFPRLH FFMVGFAPLT SRGSQQYRAL TVPELTQQMW DAKNMMCAAD PRHGRYLTAS AMFRGKMSTK EVDEQMINVQ NKNSSYFVEW
401: IPNNVKSSVC DIPPTGLSMA STFVGNSTSI QEMFRRVSEQ FTAMFRRKAF LHWYTGEGMD EMEFTEAESN MNDLVSEYQQ YQDATADEEG EYEDEDQEAE
501: DDM
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Arabidopsis Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.