Factsheet for PGSC0003DMT400072466

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32297	Sorghum	cytosol	98.43	98.65
Os01t0282800-02	Rice	plasma membrane	98.43	98.43
Solyc10g080940.1.1	Tomato	nucleus	99.33	98.23
Os01t0805900-01	Rice	plasma membrane	97.54	97.54
TraesCS3B01G363500.1	Wheat	golgi, unclear	97.54	97.54
TraesCS3A01G333300.1	Wheat	cytosol	97.54	96.67
PGSC0003DMT400014466	Potato	cytosol	59.96	95.37
PGSC0003DMT400028800	Potato	cytosol	95.08	95.08
PGSC0003DMT400037093	Potato	cytosol	95.08	95.08
PGSC0003DMT400078206	Potato	cytosol	94.63	94.84
PGSC0003DMT400076938	Potato	cytosol	94.63	94.63
PGSC0003DMT400049212	Potato	cytosol	94.63	94.42
PGSC0003DMT400053750	Potato	cytosol	93.96	94.38
PGSC0003DMT400025739	Potato	cytosol	93.29	92.46
PGSC0003DMT400075425	Potato	cytosol	91.95	91.13
TraesCS3D01G326900.1	Wheat	plastid	97.54	87.37
HORVU3Hr1G078940.1	Barley	mitochondrion	97.32	86.48
PGSC0003DMT400012732	Potato	cytosol	25.5	45.42
PGSC0003DMT400003336	Potato	cytosol	42.95	42.67
PGSC0003DMT400030110	Potato	cytosol	42.95	42.57
PGSC0003DMT400022574	Potato	cytosol	42.51	42.22
PGSC0003DMT400085117	Potato	cytosol	27.07	42.16
PGSC0003DMT400078710	Potato	cytosol	42.51	42.13
PGSC0003DMT400010906	Potato	cytosol	42.28	42.09
PGSC0003DMT400039263	Potato	cytosol	34.9	32.91
PGSC0003DMT400046148	Potato	cytosol	30.43	31.41
PGSC0003DMT400077781	Potato	cytosol	28.86	31.39

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:102586422	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M1CQC8	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400028193	PGSC:PGSC0003DMG400028193
EnsemblPlants:PGSC0003DMT400072466	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF106	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000296F2D3	RefSeq:XP_006339255.1	SEG:seg	:	:

Description

Tubulin beta-1 chain [Source:PGSC_GENE;Acc:PGSC0003DMG400028193]

Coordinates

chr10:+:56983603..56986584

Molecular Weight (calculated)

50353.5 Da

IEP (calculated)

4.484

GRAVY (calculated)

-0.372

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPSGRYVGTS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEE YEVQEEN

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.