Factsheet for PGSC0003DMT400014466

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P18460_001	Banana	cytosol	87.19	63.47
Solyc03g118760.2.1	Tomato	nucleus	99.29	62.98
PGSC0003DMT400072466	Potato	cytosol	95.37	59.96
VIT_17s0000g02450.t01	Wine grape	cytosol	94.31	59.55
PGSC0003DMT400053750	Potato	cytosol	93.95	59.33
PGSC0003DMT400037093	Potato	cytosol	94.31	59.28
PGSC0003DMT400078206	Potato	cytosol	93.59	58.97
PGSC0003DMT400076938	Potato	cytosol	93.59	58.84
KRH41834	Soybean	cytosol	92.88	58.65
PGSC0003DMT400028800	Potato	cytosol	93.24	58.61
PGSC0003DMT400049212	Potato	cytosol	93.24	58.48
PGSC0003DMT400025739	Potato	cytosol	93.59	58.31
KRH60536	Soybean	endoplasmic reticulum	92.17	58.2
PGSC0003DMT400075425	Potato	cytosol	92.17	57.43
PGSC0003DMT400085117	Potato	cytosol	29.54	28.92
PGSC0003DMT400030110	Potato	cytosol	40.21	25.06
PGSC0003DMT400022574	Potato	cytosol	39.86	24.89
PGSC0003DMT400003336	Potato	cytosol	39.5	24.67
PGSC0003DMT400078710	Potato	cytosol	39.5	24.61
PGSC0003DMT400010906	Potato	cytosol	39.15	24.5
PGSC0003DMT400039263	Potato	cytosol	31.32	18.57
PGSC0003DMT400077781	Potato	cytosol	27.05	18.49
PGSC0003DMT400046148	Potato	cytosol	27.05	17.55
PGSC0003DMT400012732	Potato	cytosol	13.17	14.74

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M1A496	PFAM:PF00091
PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400005671	PGSC:PGSC0003DMG400005671	EnsemblPlants:PGSC0003DMT400014466	PRINTS:PR01161	PRINTS:PR01163
PANTHER:PTHR11588	PANTHER:PTHR11588:SF256	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000294C6C1	:	:	:	:	:

Description

Beta tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400005671]

Coordinates

chr3:-:58276520..58277808

Molecular Weight (calculated)

32001.9 Da

IEP (calculated)

4.521

GRAVY (calculated)

-0.353

Length

281 amino acids

Sequence
(BLAST)

001: MMLTFSVFPS PKVSDTVVEP YNATLSVHQL VENADECMVL DNEALYDICF RTLKLSTPSF GDLNHLISAT MSGVTCCLRF PGQLNSDLRK LAVNLIPFPR
101: LHFFMVGFAP LTSRGSQQYR ALTVPELTQQ MWDSKNMMCA ADPRHGRYLT ASALFRGKMS TKEVDEQMMN VQNKNSSYFV EWIPNNVKSS VCDIPPRGLS
201: MSSTFIGNST SIQEMFRRVS EQFTAMFRRK AFLHWYTGEG MDEMEFTEAE SNMNDLVAEY QQYQDATAEE NSEYEDETGE D

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.