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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • golgi 1
  • mitochondrion 2
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g006890.2.1 Tomato cytosol 98.89 98.67
CDY66630 Canola cytosol 94.22 97.47
PGSC0003DMT400030110 Potato cytosol 96.67 96.45
AT4G14960.2 Thale cress cytosol 96.22 96.22
PGSC0003DMT400003336 Potato cytosol 96.22 96.22
CDY50974 Canola cytosol 96.22 96.22
CDY28123 Canola cytosol 96.22 96.22
CDY29334 Canola cytosol 92.0 96.06
AT1G50010.1 Thale cress cytosol 96.0 96.0
CDY45043 Canola cytosol 96.0 96.0
CDY03583 Canola cytosol 96.0 96.0
AT1G04820.1 Thale cress cytosol 96.0 96.0
Bra014232.1-P Field mustard cytosol 96.0 96.0
Bra018825.1-P Field mustard cytosol 96.0 96.0
KRG91143 Soybean nucleus 95.78 95.99
KRH35640 Soybean cytosol, nucleus 95.78 95.99
CDY25017 Canola cytosol 87.11 95.61
Bra039648.1-P Field mustard cytosol 95.56 95.56
PGSC0003DMT400012732 Potato cytosol 52.67 94.42
PGSC0003DMT400078710 Potato cytosol 92.89 92.68
PGSC0003DMT400010906 Potato cytosol 91.56 91.76
PGSC0003DMT400085117 Potato cytosol 58.0 90.94
PGSC0003DMT400077781 Potato cytosol 49.33 54.01
PGSC0003DMT400046148 Potato cytosol 51.11 53.12
PGSC0003DMT400053750 Potato cytosol 42.67 43.15
PGSC0003DMT400075425 Potato cytosol 43.11 43.02
PGSC0003DMT400076938 Potato cytosol 42.67 42.95
PGSC0003DMT400072466 Potato cytosol 42.22 42.51
PGSC0003DMT400078206 Potato cytosol 42.0 42.38
PGSC0003DMT400037093 Potato cytosol 42.0 42.28
PGSC0003DMT400025739 Potato cytosol 42.22 42.13
PGSC0003DMT400028800 Potato cytosol 41.78 42.06
PGSC0003DMT400049212 Potato cytosol 41.56 41.74
PGSC0003DMT400014466 Potato cytosol 24.89 39.86
PGSC0003DMT400039263 Potato cytosol 30.0 28.48
Protein Annotations
Gene3D:1.10.287.600MapMan:20.1.1.1Gene3D:3.30.1330.20Gene3D:3.40.50.1440ProteinID:ABB02631ProteinID:ABB02631.1
ProteinID:ACH68563ProteinID:ACH68563.1InterPro:Alpha_tubulinncoils:CoilEMBL:DQ222500EMBL:EU935741
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005198GO:GO:0005200
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005856GO:GO:0005874GO:GO:0007010GO:GO:0007017GO:GO:0008150GO:GO:0009987
GO:GO:0016043GO:GO:0016787InterPro:IPR023123InterPro:IPR036525InterPro:IPR037103UniProt:M1AGX9
PFAM:PF00091PFAM:PF03953EnsemblPlantsGene:PGSC0003DMG400008752PGSC:PGSC0003DMG400008752EnsemblPlants:PGSC0003DMT400022574PRINTS:PR01161
PRINTS:PR01162ScanProsite:PS00227PANTHER:PTHR11588PANTHER:PTHR11588:SF254SMART:SM00864SMART:SM00865
SUPFAM:SSF52490SUPFAM:SSF55307InterPro:Tub_FtsZ_CInterPro:TubulinInterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_CInterPro:Tubulin_CSInterPro:Tubulin_FtsZ_GTPaseUniParc:UPI000294F7C0SEG:seg
Description
Alpha-tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400008752]
Coordinates
chr8:-:1356888..1359909
Molecular Weight (calculated)
49610.7 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.178
Length
450 amino acids
Sequence
(BLAST)
001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLDIE RPTYTNLNRL ISQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMVKCDPRHG KYMACCLMFR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEAD GVGDDDDEEY
Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)
001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY
Arabidopsis Description
TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.