Factsheet for Solyc08g006890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022574	Potato	cytosol	98.67	98.89
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	97.78	98.0
CDY66630	Canola	cytosol	94.01	97.47
AT4G14960.2	Thale cress	cytosol	96.23	96.44
CDY50974	Canola	cytosol	96.23	96.44
CDY28123	Canola	cytosol	96.23	96.44
CDY29334	Canola	cytosol	92.02	96.29
AT1G50010.1	Thale cress	cytosol	96.01	96.22
Solyc02g087880.2.1	Tomato	cytosol, unclear	96.01	96.22
CDY45043	Canola	cytosol	96.01	96.22
CDY03583	Canola	cytosol	96.01	96.22
Bra018825.1-P	Field mustard	cytosol	96.01	96.22
Bra014232.1-P	Field mustard	cytosol	96.01	96.22
AT1G04820.1	Thale cress	cytosol	96.01	96.22
KRG91143	Soybean	nucleus	95.79	96.21
KRH35640	Soybean	cytosol, nucleus	95.79	96.21
CDY25017	Canola	cytosol	87.14	95.85
Bra039648.1-P	Field mustard	cytosol	95.57	95.78
Solyc12g088180.1.1	Tomato	cytosol	47.45	94.27
Solyc02g091870.2.1	Tomato	cytosol, unclear	93.13	93.13
Solyc12g089310.1.1	Tomato	nucleus	43.02	43.02
Solyc06g035970.2.1	Tomato	nucleus	42.57	42.95
Solyc03g025730.2.1	Tomato	nucleus	42.13	42.7
Solyc04g081490.2.1	Tomato	nucleus	42.35	42.35
Solyc10g080940.1.1	Tomato	nucleus	42.35	42.26
Solyc10g086760.1.1	Tomato	nucleus	41.91	42.19
Solyc06g076640.2.1	Tomato	nucleus	42.13	42.04
Solyc03g118760.2.1	Tomato	nucleus	41.24	41.99
Solyc10g085020.1.1	Tomato	nucleus	41.46	41.19
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	43.02	40.59
Solyc03g111380.2.1	Tomato	cytosol	29.93	28.48

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:K4CIH7
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:Solyc08g006890.2
EnsemblPlants:Solyc08g006890.2.1	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000276C242	SEG:seg	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:K4CIH7]

Coordinates

chr8:+:1457076..1460213

Molecular Weight (calculated)

49769.8 Da

IEP (calculated)

4.611

GRAVY (calculated)

-0.203

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLDIE RPTYTNLNRL ISQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMVKCDPRHG KYMACCLMFR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGD DEADGEDDEE Y

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.