Factsheet for Solyc03g025730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037093	Potato	cytosol	99.78	99.33
Bra009710.1-P	Field mustard	cytosol	96.85	95.99
AT5G23860.1	Thale cress	cytosol	96.85	95.99
VIT_02s0025g03680.t01	Wine grape	cytosol	96.4	95.97
Solyc06g035970.2.1	Tomato	nucleus	96.4	95.97
Zm00001d040509_P001	Maize	cytosol	47.87	95.95
CDX88051	Canola	cytosol	91.69	95.77
CDX80390	Canola	cytosol	96.63	95.77
KRG91525	Soybean	nucleus	96.4	95.76
KRH35301	Soybean	nucleus	96.4	95.76
GSMUA_Achr1P17290_001	Banana	cytosol	78.88	95.12
Solyc10g086760.1.1	Tomato	nucleus	95.51	94.87
Solyc10g080940.1.1	Tomato	nucleus	95.51	94.03
Solyc10g085020.1.1	Tomato	nucleus	95.73	93.83
Solyc06g076640.2.1	Tomato	nucleus	94.83	93.36
Solyc03g118760.2.1	Tomato	nucleus	91.46	91.87
Zm00001d008216_P002	Maize	cytosol	48.99	91.21
Solyc04g081490.2.1	Tomato	nucleus	92.13	90.91
Solyc12g089310.1.1	Tomato	nucleus	92.13	90.91
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	95.06	88.49
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	43.15	42.67
Solyc08g006890.2.1	Tomato	cytosol	42.7	42.13
Solyc02g087880.2.1	Tomato	cytosol, unclear	42.02	41.56
Solyc02g091870.2.1	Tomato	cytosol, unclear	42.02	41.46
Solyc12g088180.1.1	Tomato	cytosol	17.98	35.24
Solyc03g111380.2.1	Tomato	cytosol	35.06	32.91

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
UniProt:K4BF46	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	EnsemblPlantsGene:Solyc03g025730.2	EnsemblPlants:Solyc03g025730.2.1	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002768E8C
SEG:seg	:	:	:	:	:

Description

Tubulin beta-8 chain [Source:Projected from Arabidopsis thaliana (AT5G23860) UniProtKB/Swiss-Prot;Acc:P29516]

Coordinates

chr3:-:3138445..3142250

Molecular Weight (calculated)

50001.1 Da

IEP (calculated)

4.584

GRAVY (calculated)

-0.377

Length

445 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYKGES DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVMDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDASA EEEGYDYEDE EGQEA

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.