Factsheet for Solyc12g089310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062540.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20010.1	Solyc02g062540.2.1	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075425	Potato	cytosol	98.67	98.67
VIT_18s0001g14360.t01	Wine grape	cytosol	92.46	93.08
AT1G75780.1	Thale cress	cytosol	92.24	93.06
CDX87664	Canola	cytosol	92.24	93.06
CDX73198	Canola	cytosol	92.24	93.06
Bra015815.1-P	Field mustard	cytosol	92.24	93.06
Solyc04g081490.2.1	Tomato	nucleus	92.68	92.68
KRH51701	Soybean	nucleus	92.02	92.63
Solyc06g035970.2.1	Tomato	nucleus	91.8	92.62
KRH05958	Soybean	nucleus	92.02	92.43
KRH61035	Soybean	nucleus	92.02	92.43
Solyc10g086760.1.1	Tomato	nucleus	91.8	92.41
Solyc03g025730.2.1	Tomato	nucleus	90.91	92.13
Solyc10g080940.1.1	Tomato	nucleus	91.57	91.37
AT1G20010.1	Thale cress	cytosol	90.91	91.31
KRH17435	Soybean	nucleus	92.46	91.25
Solyc06g076640.2.1	Tomato	nucleus	91.35	91.15
Solyc03g118760.2.1	Tomato	nucleus	89.36	90.97
Solyc10g085020.1.1	Tomato	nucleus	91.35	90.75
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	90.02	84.94
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	43.24	43.33
Solyc08g006890.2.1	Tomato	cytosol	43.02	43.02
Solyc02g087880.2.1	Tomato	cytosol, unclear	42.57	42.67
Solyc02g091870.2.1	Tomato	cytosol, unclear	42.35	42.35
Solyc12g088180.1.1	Tomato	cytosol	18.63	37.0
Solyc03g111380.2.1	Tomato	cytosol	34.15	32.49

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
UniProt:K4DH02	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF116	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	EnsemblPlantsGene:Solyc12g089310.1	EnsemblPlants:Solyc12g089310.1.1	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000276973B
SEG:seg	:	:	:	:	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:K4DH02]

Coordinates

chr12:-:64443828..64446248

Molecular Weight (calculated)

50665.9 Da

IEP (calculated)

4.507

GRAVY (calculated)

-0.355

Length

451 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DPTGRYNSDN AGASDLQLER INVYFNEATA GRFVPRAVLM DLEPGTMDSI RSGPYGQIFR PDNFVFGQSG
101: AGNNWAKGHY TEGAELIDSV LDVVRKEAEY CDCMQGFQVC HSLGGGTGSG MGTLLISKIR EEYPDRMMLT FSVFPSPKVS DTVVEPYNAT LSVHQLVENA
201: DECMVLDNEA LYDICFRTLK LTNPTFGDLN HLISATMSGV TCCLRFPGQL NSDLRKLAVN LIPFPRLHFF MVGFAPLTSR GSQQYSSLTV PELTQQMWDA
301: KNMMCAADPR HGRYLTASAM FRGKMSTKEV DEQMINVQNK NSSYFVEWIP NNVKSSVCDI PPTGLKMAST FIGNSTSIQE MFRRVSEQFT AMYRRKAFLH
401: WYTGEGMDEM EFTEAESNMN DLVAEYQQYQ DATAEVEEDF DEGVEEHYEG Q

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.