Factsheet for Solyc02g062540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g081490.2.1
Solyc05g007420.1.1
Solyc10g085020.1.1
Solyc10g086760.1.1
Solyc12g089310.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	Solyc04g081490.2.1	AT1G20010.1	18390592
AT3G50960.1	Solyc12g089310.1.1	AT1G20010.1	18390592
AT3G50960.1	Solyc10g085020.1.1	AT5G62690.1	18390592
AT3G50960.1	Solyc10g086760.1.1	AT5G62690.1	18390592
AT3G50960.1	Solyc10g085020.1.1	AT5G62700.1	18390592
AT3G50960.1	Solyc10g086760.1.1	AT5G62700.1	18390592
AT5G66410.1	Solyc05g007420.1.1	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040052	Potato	cytosol	98.25	98.25
VIT_04s0023g02390.t01	Wine grape	cytosol	80.7	80.0
Os05t0255600-01	Rice	cytosol	80.26	79.57
KRH69862	Soybean	cytosol	79.39	78.36
CDY26529	Canola	cytosol	78.95	78.26
EES08806	Sorghum	cytosol	78.51	78.17
GSMUA_Achr2P14840_001	Banana	cytosol	71.49	77.99
AT5G66410.1	Thale cress	cytosol	78.51	77.83
Os11t0604700-00	Rice	cytosol	78.51	77.83
AT3G50960.1	Thale cress	cytosol	78.07	77.39
CDX77968	Canola	cytosol	78.07	77.39
Bra036844.1-P	Field mustard	cytosol	78.07	77.39
KRH17436	Soybean	cytosol, extracellular	78.07	77.06
CDX73765	Canola	cytosol	77.63	76.96
Zm00001d048892_P001	Maize	extracellular	76.75	76.42
CDY57635	Canola	cytosol	76.75	76.09
Zm00001d007600_P001	Maize	cytosol	76.32	75.98
VIT_14s0036g00970.t01	Wine grape	plasma membrane	80.26	75.0
Bra038875.1-P	Field mustard	nucleus	72.81	74.77
TraesCS7B01G044100.1	Wheat	cytosol	72.37	71.74
HORVU7Hr1G029120.1	Barley	golgi	32.89	66.96
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	31.58	63.72
Zm00001d033260_P001	Maize	plastid	32.89	48.7
Zm00001d025839_P001	Maize	cytosol	35.53	48.21
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	25.88	42.45
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	25.88	42.45
Solyc11g012730.1.1	Tomato	cytosol	36.84	39.62

Protein Annotations

MapMan:20.1.2.3	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479
GO:GO:0008616	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	UniProt:K4B6E2	PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc02g062540.2	EnsemblPlants:Solyc02g062540.2.1	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000276827A	SEG:seg

Description

No Description!

Coordinates

chr2:-:34246212..34251057

Molecular Weight (calculated)

25751.3 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.646

Length

228 amino acids

Sequence
(BLAST)

001: MDPDSVKSTL SNLAFGNVMA AAARDYQKEV LAQEKAQASS SVNEDIDLDE LMDDPELEKL HADRIAALKK EAEKRQALKR QGHGEYREIT EGDFLGEVTG
101: SEKVICHFYH REFYRCKIMD KHLKSLAPIH VDTKFLKLDA ENAPFFVTKL GIKTLPCVIF FRNGIASDRL VGFQDLGGKD DFSTKALEGF LLKKGIIKEN
201: KKEEEDDDSY DDRNRSVRSS INPDSDSD

Best Arabidopsis Sequence Match ( AT5G66410.1 )
(BLAST)

001: MDPDTVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQGSR PVNEEVDLDE LMDDPELEKL HADRIAALRR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKMDA ENAPFFVTKL AIKTLPCVIL FSKGIAMDRL VGFQDLGAKD DFSTTKLENL LVKKGMLSEK
201: RKEEDEEDYE YQESIRRSVR SSANVDSDSD

Arabidopsis Description

PLP3BPLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.