Factsheet for PGSC0003DMT400040052

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008728
PGSC0003DMT400025739
PGSC0003DMT400028800
PGSC0003DMT400049212
PGSC0003DMT400075425

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	PGSC0003DMT400025739	AT1G20010.1	18390592
AT3G50960.1	PGSC0003DMT400075425	AT1G20010.1	18390592
AT3G50960.1	PGSC0003DMT400028800	AT5G62690.1	18390592
AT3G50960.1	PGSC0003DMT400049212	AT5G62690.1	18390592
AT3G50960.1	PGSC0003DMT400028800	AT5G62700.1	18390592
AT3G50960.1	PGSC0003DMT400049212	AT5G62700.1	18390592
AT5G66410.1	PGSC0003DMT400008728	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062540.2.1	Tomato	cytosol	98.25	98.25
VIT_04s0023g02390.t01	Wine grape	cytosol	79.82	79.13
Os05t0255600-01	Rice	cytosol	79.39	78.7
KRH69862	Soybean	cytosol	78.51	77.49
EES08806	Sorghum	cytosol	77.63	77.29
KRH17436	Soybean	cytosol, extracellular	78.07	77.06
GSMUA_Achr2P14840_001	Banana	cytosol	70.61	77.03
Os11t0604700-00	Rice	cytosol	77.63	76.96
AT3G50960.1	Thale cress	cytosol	77.19	76.52
CDY26529	Canola	cytosol	77.19	76.52
AT5G66410.1	Thale cress	cytosol	76.75	76.09
CDX77968	Canola	cytosol	76.32	75.65
Bra036844.1-P	Field mustard	cytosol	76.32	75.65
Zm00001d048892_P001	Maize	extracellular	75.88	75.55
CDX73765	Canola	cytosol	75.88	75.22
Zm00001d007600_P001	Maize	cytosol	75.44	75.11
CDY57635	Canola	cytosol	75.0	74.35
VIT_14s0036g00970.t01	Wine grape	plasma membrane	79.39	74.18
Bra038875.1-P	Field mustard	nucleus	71.05	72.97
TraesCS7B01G044100.1	Wheat	cytosol	71.49	70.87
HORVU7Hr1G029120.1	Barley	golgi	32.46	66.07
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	31.14	62.83
Zm00001d025839_P001	Maize	cytosol	35.53	48.21
Zm00001d033260_P001	Maize	plastid	32.46	48.05
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	25.44	41.73
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	25.44	41.73
PGSC0003DMT400034610	Potato	cytosol	34.65	36.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400040052	EnsemblPlantsGene:PGSC0003DMG400015493	EntrezGene:102594865	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	PFAM:PF00085	PGSC:PGSC0003DMG400015493	RefSeq:XP_006346971.1
SEG:seg	SUPFAM:SSF52833	UniParc:UPI00029591DC	UniProt:M1B980	MapMan:20.1.2.3	:

Description

Thioredoxin domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015493]

Coordinates

chr2:-:20787637..20792571

Molecular Weight (calculated)

25808.4 Da

IEP (calculated)

5.101

GRAVY (calculated)

-0.646

Length

228 amino acids

Sequence
(BLAST)

001: MDPDSVKSTL SNLAFGNVMA AAARDYQKEV LAQEKVQASS SVNQDIDLDE LMDDPELEKL HADRIAALKK EAEKRQSLKR QGHGEYREIT EGDFLGEVTG
101: SEKVICHFYH REFYRCKIMD KHLKSLAPIH VDTKFLKLDA ENAPFFVTKL GIKTLPCIIF FRNGIASDRL VGFQDLGGKD DFSTKALEGF LLKKGIIKEN
201: KKEEEDDDSY DDRNRSVRSS INPDSDSD

Best Arabidopsis Sequence Match ( AT5G66410.1 )
(BLAST)

001: MDPDTVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQGSR PVNEEVDLDE LMDDPELEKL HADRIAALRR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKMDA ENAPFFVTKL AIKTLPCVIL FSKGIAMDRL VGFQDLGAKD DFSTTKLENL LVKKGMLSEK
201: RKEEDEEDYE YQESIRRSVR SSANVDSDSD

Arabidopsis Description

PLP3BPLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.