Factsheet for Os05t0255600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0167300-01
Os03t0105600-01
Os03t0780600-01
Os06t0671900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	Os02t0167300-01	AT5G44340.1	18390592
AT3G50960.1	Os03t0780600-01	AT5G44340.1	18390592
AT3G50960.1	Os06t0671900-01	AT5G44340.1	18390592
AT3G50960.1	Os03t0105600-01	AT5G62690.1	18390592
AT3G50960.1	Os03t0105600-01	AT5G62700.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0604700-00	Rice	cytosol	96.52	96.52
EES08806	Sorghum	cytosol	91.74	92.14
Zm00001d007600_P001	Maize	cytosol	90.0	90.39
Zm00001d048892_P001	Maize	extracellular	89.13	89.52
HORVU7Hr1G029120.1	Barley	golgi	42.17	86.61
TraesCS7B01G044100.1	Wheat	cytosol	86.09	86.09
Solyc02g062540.2.1	Tomato	cytosol	79.57	80.26
PGSC0003DMT400040052	Potato	cytosol	78.7	79.39
GSMUA_Achr2P14840_001	Banana	cytosol	70.87	77.99
KRH69862	Soybean	cytosol	77.39	77.06
CDY26529	Canola	cytosol	76.96	76.96
KRH17436	Soybean	cytosol, extracellular	76.96	76.62
VIT_04s0023g02390.t01	Wine grape	cytosol	76.52	76.52
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	37.39	76.11
AT5G66410.1	Thale cress	cytosol	76.09	76.09
Bra036844.1-P	Field mustard	cytosol	76.09	76.09
AT3G50960.1	Thale cress	cytosol	76.09	76.09
CDX73765	Canola	cytosol	75.65	75.65
CDX77968	Canola	cytosol	75.22	75.22
CDY57635	Canola	cytosol	74.78	74.78
Bra038875.1-P	Field mustard	nucleus	70.87	73.42
VIT_14s0036g00970.t01	Wine grape	plasma membrane	76.09	71.72
Zm00001d033260_P001	Maize	plastid	39.13	58.44
Zm00001d025839_P001	Maize	cytosol	40.43	55.36
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	31.3	51.8
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	31.3	51.8
Os08t0250700-01	Rice	cytosol	30.0	32.86

Protein Annotations

MapMan:20.1.2.3	Gene3D:3.40.30.10	EntrezGene:4338227	ProteinID:AAV31386.1	EMBL:AK073067	ProteinID:BAF16949.1
ProteinID:BAS93045.1	ProteinID:EEE63019.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	EnsemblPlantsGene:Os05g0255600	EnsemblPlants:Os05t0255600-01
PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	UniProt:Q60EF8	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI00004503DD	RefSeq:XP_015637425.1	SEG:seg	:	:

Description

Thioredoxin domain 2 containing protein. (Os05t0255600-01)

Coordinates

chr5:+:9432377..9436129

Molecular Weight (calculated)

26021.9 Da

IEP (calculated)

5.129

GRAVY (calculated)

-0.555

Length

230 amino acids

Sequence
(BLAST)

001: MDPDAVKSTL SNLAFGNVMA AAARDYQKEI VAKEKAQAAS ASHDEVDLDE LLDDPELEKL HAERIAALKK EVEKREVLKR QGHGEYREIT EGDFLGEVTG
101: SEKVICHFYH REFYRCKIMD KHLKALAPIY LGTKFIKLDA ENAPFFVTKL GIKTLPCVIL FKKGIAADRL IGFQDLGSKD DFSTRALENI LKMKGIIDEK
201: KKDEDDEDDE TYMSMNRRVR SSTAQDSDSD

Best Arabidopsis Sequence Match ( AT5G66410.1 )
(BLAST)

001: MDPDTVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQGSR PVNEEVDLDE LMDDPELEKL HADRIAALRR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKMDA ENAPFFVTKL AIKTLPCVIL FSKGIAMDRL VGFQDLGAKD DFSTTKLENL LVKKGMLSEK
201: RKEEDEEDYE YQESIRRSVR SSANVDSDSD

Arabidopsis Description

PLP3BPLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.