Factsheet for Bra036844.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010114.1-P
Bra018184.1-P
Bra019493.1-P
Bra027544.1-P
Bra033737.1-P
Bra033796.1-P
Bra039506.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	Bra027544.1-P	AT5G44340.1	18390592
AT3G50960.1	Bra033737.1-P	AT5G44340.1	18390592
AT3G50960.1	Bra039506.1-P	AT5G44340.1	18390592
AT3G50960.1	Bra019493.1-P	AT5G62690.1	18390592
AT3G50960.1	Bra010114.1-P	AT5G62700.1	18390592
AT3G50960.1	Bra018184.1-P	AT5G62700.1	18390592
AT3G50960.1	Bra033796.1-P	AT5G62700.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77968	Canola	cytosol	99.13	99.13
Bra038875.1-P	Field mustard	nucleus	90.87	94.14
AT3G50960.1	Thale cress	cytosol	93.04	93.04
Solyc02g062540.2.1	Tomato	cytosol	77.39	78.07
KRH69862	Soybean	cytosol	78.26	77.92
KRH17436	Soybean	cytosol, extracellular	77.83	77.49
VIT_04s0023g02390.t01	Wine grape	cytosol	76.96	76.96
Zm00001d007600_P001	Maize	cytosol	76.52	76.86
Os11t0604700-00	Rice	cytosol	76.52	76.52
EES08806	Sorghum	cytosol	76.09	76.42
PGSC0003DMT400040052	Potato	cytosol	75.65	76.32
Os05t0255600-01	Rice	cytosol	76.09	76.09
Zm00001d048892_P001	Maize	extracellular	75.22	75.55
TraesCS7B01G044100.1	Wheat	cytosol	74.78	74.78
GSMUA_Achr2P14840_001	Banana	cytosol	66.96	73.68
VIT_14s0036g00970.t01	Wine grape	plasma membrane	76.96	72.54
HORVU7Hr1G029120.1	Barley	golgi	33.91	69.64
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	32.17	65.49
Zm00001d025839_P001	Maize	cytosol	36.09	49.4
Zm00001d033260_P001	Maize	plastid	33.04	49.35
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	26.52	43.88
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	26.52	43.88
Bra011517.1-P	Field mustard	cytosol	33.04	36.19
Bra017642.1-P	Field mustard	endoplasmic reticulum	20.87	29.81

Protein Annotations

EnsemblPlants:Bra036844.1	EnsemblPlants:Bra036844.1-P	EnsemblPlantsGene:Bra036844	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	PFAM:PF00085	SEG:seg	SUPFAM:SSF52833
UniParc:UPI0002542C5A	UniProt:M4F6Y4	MapMan:20.1.2.3	:	:	:

Description

AT3G50960 (E=4e-099) PLP3a | PLP3a (Phosducin-like protein 3 homolog); beta-tubulin binding

Coordinates

chrA09:-:25446461..25447892

Molecular Weight (calculated)

26311.2 Da

IEP (calculated)

5.946

GRAVY (calculated)

-0.679

Length

230 amino acids

Sequence
(BLAST)

001: MDPDAVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQSSK HVNEEVDLDE LMDDPELEKL HADRIAALKR EVEKREAFKR QGHGEYREVN EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKVDA ENAPFFVSKL AIKTLPCVLL FSKGIAVDRL VGFQDLGTKD DFTTTRLENV LIKKGMLSKK
201: KKEEDDEDAE YQESIRRSVR SSENLDSDSD

Best Arabidopsis Sequence Match ( AT3G50960.1 )
(BLAST)

001: MDPDAVKSTL SNLAFGNVMA AAARNYQKEV LANEKAQGSN PVNEEVDLDE LMDDPELERL HADRIAALKR EVEKRESFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKVDA ENAPFFVTKL AIKTLPCVVL FSKGVAMDRL VGFQDLGTKD DFTTNKLENV LLKKGMLSKK
201: KKEEDDEDAE YQESIRRSVR SSENLDSDSD

Arabidopsis Description

PLP3AThioredoxin domain-containing protein PLP3A [Source:UniProtKB/Swiss-Prot;Acc:Q6NPL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.