Factsheet for VIT_04s0023g02390.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02200.t01
VIT_08s0007g01630.t01
VIT_10s0003g05320.t01
VIT_18s0001g14360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	VIT_18s0001g14360.t01	AT1G20010.1	18390592
AT3G50960.1	VIT_10s0003g05320.t01	AT5G44340.1	18390592
AT3G50960.1	VIT_08s0007g01630.t01	AT5G62690.1	18390592
AT3G50960.1	VIT_08s0007g01630.t01	AT5G62700.1	18390592
AT5G66410.1	VIT_01s0026g02200.t01	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0036g00970.t01	Wine grape	plasma membrane	97.39	91.8
Solyc02g062540.2.1	Tomato	cytosol	80.0	80.7
KRH69862	Soybean	cytosol	80.43	80.09
KRH17436	Soybean	cytosol, extracellular	80.43	80.09
PGSC0003DMT400040052	Potato	cytosol	79.13	79.82
Bra036844.1-P	Field mustard	cytosol	76.96	76.96
CDX77968	Canola	cytosol	76.96	76.96
CDY26529	Canola	cytosol	76.52	76.52
Os05t0255600-01	Rice	cytosol	76.52	76.52
AT5G66410.1	Thale cress	cytosol	76.09	76.09
CDX73765	Canola	cytosol	76.09	76.09
AT3G50960.1	Thale cress	cytosol	76.09	76.09
Os11t0604700-00	Rice	cytosol	75.22	75.22
EES08806	Sorghum	cytosol	74.35	74.67
Zm00001d007600_P001	Maize	cytosol	74.35	74.67
CDY57635	Canola	cytosol	74.35	74.35
GSMUA_Achr2P14840_001	Banana	cytosol	67.39	74.16
Zm00001d048892_P001	Maize	extracellular	73.48	73.8
Bra038875.1-P	Field mustard	nucleus	70.43	72.97
TraesCS7B01G044100.1	Wheat	cytosol	70.87	70.87
HORVU7Hr1G029120.1	Barley	golgi	33.04	67.86
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	31.3	63.72
Zm00001d033260_P001	Maize	plastid	33.48	50.0
Zm00001d025839_P001	Maize	cytosol	34.78	47.62
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	26.09	43.17
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	26.09	43.17
VIT_03s0091g00380.t01	Wine grape	cytosol	32.61	35.38

Protein Annotations

EntrezGene:100264353	wikigene:100264353	MapMan:20.1.2.3	Gene3D:3.40.30.10	ProteinID:CCB44419	ProteinID:CCB44419.1
UniProt:F6GWT4	EMBL:FN594959	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479
GO:GO:0008616	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740
GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	EntrezGene:LOC100264353	wikigene:LOC100264353	PFAM:PF00085
PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI00015CB9B8
ArrayExpress:VIT_04s0023g02390	EnsemblPlantsGene:VIT_04s0023g02390	EnsemblPlants:VIT_04s0023g02390.t01	unigene:Vvi.22929	RefSeq:XP_002266846	RefSeq:XP_002266846.1
RefSeq:XP_002276296	RefSeq:XP_002276296.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:18946155..18950901

Molecular Weight (calculated)

25910.8 Da

IEP (calculated)

5.991

GRAVY (calculated)

-0.601

Length

230 amino acids

Sequence
(BLAST)

001: MDPDSVKTTL SNLAFGNVMA AAARDYQKEV LSQQKALASS SINQEVDLDE LMDDPELERL HADRIAALKK EAEKRQALKK QGHGEYREVT EADFLGEVTG
101: SEKVICHFYH REFYRCKIMD KHLKSLAPRH MDTKFIKLDA ENAPFFVAKL GVKTLPCVIL FRKGIAVDRL IGFQDMGGKD DFATRTLEAL LIKKGIVSEK
201: KKDEDDEDGG YPESRRNTVR SSVDPNSDSD

Best Arabidopsis Sequence Match ( AT5G66410.1 )
(BLAST)

001: MDPDTVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQGSR PVNEEVDLDE LMDDPELEKL HADRIAALRR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKMDA ENAPFFVTKL AIKTLPCVIL FSKGIAMDRL VGFQDLGAKD DFSTTKLENL LVKKGMLSEK
201: RKEEDEEDYE YQESIRRSVR SSANVDSDSD

Arabidopsis Description

PLP3BPLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.