CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99108
KRH05958
KRH11812
KRH17435
KRH36829
KRH42279
KRH45889
KRH51701
KRH58404
KRH61035

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	KRH05958	AT1G20010.1	18390592
AT3G50960.1	KRH17435	AT1G20010.1	18390592
AT3G50960.1	KRH51701	AT1G20010.1	18390592
AT3G50960.1	KRH61035	AT1G20010.1	18390592
AT3G50960.1	KRH11812	AT5G44340.1	18390592
AT3G50960.1	KRH36829	AT5G44340.1	18390592
AT3G50960.1	KRH42279	AT5G44340.1	18390592
AT3G50960.1	KRH58404	AT5G44340.1	18390592
AT5G66410.1	KRG99108	AT1G69690.1	21798944
AT5G66410.1	KRH45889	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17436	Soybean	cytosol, extracellular	94.81	94.81
VIT_04s0023g02390.t01	Wine grape	cytosol	80.09	80.43
Solyc02g062540.2.1	Tomato	cytosol	78.36	79.39
PGSC0003DMT400040052	Potato	cytosol	77.49	78.51
Bra036844.1-P	Field mustard	cytosol	77.92	78.26
AT3G50960.1	Thale cress	cytosol	77.92	78.26
CDX73765	Canola	cytosol	77.92	78.26
AT5G66410.1	Thale cress	cytosol	77.49	77.83
CDY26529	Canola	cytosol	77.49	77.83
CDX77968	Canola	cytosol	77.49	77.83
Os05t0255600-01	Rice	cytosol	77.06	77.39
Os11t0604700-00	Rice	cytosol	76.62	76.96
CDY57635	Canola	cytosol	75.32	75.65
EES08806	Sorghum	cytosol	74.89	75.55
VIT_14s0036g00970.t01	Wine grape	plasma membrane	79.65	75.41
GSMUA_Achr2P14840_001	Banana	cytosol	67.97	75.12
Zm00001d007600_P001	Maize	cytosol	74.46	75.11
Zm00001d048892_P001	Maize	extracellular	73.59	74.24
Bra038875.1-P	Field mustard	nucleus	71.0	73.87
TraesCS7B01G044100.1	Wheat	cytosol	72.29	72.61
HORVU7Hr1G029120.1	Barley	golgi	34.2	70.54
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	31.17	63.72
Zm00001d025839_P001	Maize	cytosol	35.5	48.81
Zm00001d033260_P001	Maize	plastid	32.47	48.7
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	26.84	44.6
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	26.84	44.6
KRH35706	Soybean	cytosol	33.33	36.15
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	32.47	35.21
KRH13153	Soybean	cytosol	23.38	35.06

Protein Annotations

EntrezGene:100305749	MapMan:20.1.2.3	Gene3D:3.40.30.10	EMBL:ACUP02000734	EMBL:BT089523	UniProt:C6SWI0
EnsemblPlantsGene:GLYMA_02G053300	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
EnsemblPlants:KRH69862	ProteinID:KRH69862	ProteinID:KRH69862.1	PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001B14F0F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:4873543..4876394

Molecular Weight (calculated)

26142.9 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.556

Length

231 amino acids

Sequence
(BLAST)

001: MDPNTVKSTL SNLAFGNVMA AAARDYQKEL LAQEKTQGSS SVHEEVDLDE LMDDPELEKL HADRIAALKK EAEKREEWKK KGHGEFREVT EGDFLGEVTG
101: SEKVICHFYH REFYRCKIMD KHLKSLAPMH IDTKFIKLDA ENAPFFVTKL AIKTLPCVLL FRQGVAVDRL VGFQDVGGKD DFTTRTLEAL LIKKGIIEEK
201: KAEDDEDDEY IDSTRRVVRS STIAGSDSDS E

Best Arabidopsis Sequence Match ( AT5G66410.1 )
(BLAST)

001: MDPDTVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQGSR PVNEEVDLDE LMDDPELEKL HADRIAALRR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKMDA ENAPFFVTKL AIKTLPCVIL FSKGIAMDRL VGFQDLGAKD DFSTTKLENL LVKKGMLSEK
201: RKEEDEEDYE YQESIRRSVR SSANVDSDSD

Arabidopsis Description

PLP3BPLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.