CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	KRH52586	AT1G71230.1	21798944
AT3G25580.1	KRH61926	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	93.43	93.43
KRH13153	Soybean	cytosol	65.26	90.26
VIT_03s0091g00380.t01	Wine grape	cytosol	81.69	82.08
PGSC0003DMT400034610	Potato	cytosol	77.46	77.1
Solyc11g012730.1.1	Tomato	cytosol	76.06	76.42
AT2G18990.1	Thale cress	cytosol	75.12	75.83
GSMUA_Achr9P21300_001	Banana	cytosol	75.12	75.83
CDX69045	Canola	cytosol	73.71	74.76
CDX75419	Canola	nucleus	73.24	74.29
AT3G25580.1	Thale cress	nucleus	72.77	73.81
Bra011517.1-P	Field mustard	cytosol	72.3	73.33
EES14790	Sorghum	cytosol	69.01	69.67
CDX72474	Canola	cytosol	36.15	69.37
Os08t0250700-01	Rice	cytosol	68.08	69.05
HORVU3Hr1G089950.1	Barley	cytosol	67.14	67.77
Zm00001d050225_P001	Maize	cytosol	67.14	67.45
TraesCS3A01G399200.1	Wheat	cytosol	65.73	66.67
TraesCS3B01G432200.1	Wheat	cytosol	65.73	66.67
TraesCS3D01G393400.1	Wheat	cytosol	65.73	66.67
CDX72476	Canola	cytosol	34.27	66.36
Bra017642.1-P	Field mustard	endoplasmic reticulum	40.85	54.04
CDY49291	Canola	mitochondrion	19.72	45.65
KRH69862	Soybean	cytosol	36.15	33.33
KRH17436	Soybean	cytosol, extracellular	35.68	32.9

Protein Annotations

EntrezGene:100814116	Gene3D:3.40.30.10	MapMan:35.1	EMBL:ACUP02006700	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G259900
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454	UniProt:I1LEH0	InterPro:IPR013766
EnsemblPlants:KRH35706	ProteinID:KRH35706	ProteinID:KRH35706.1	PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233CDE0	:	:

Description

hypothetical protein

Coordinates

chr10:+:48563415..48566192

Molecular Weight (calculated)

24436.0 Da

IEP (calculated)

5.270

GRAVY (calculated)

-0.559

Length

213 amino acids

Sequence
(BLAST)

001: MDKGKIEEVI EKQVLTVAQA VEDKIDDEIA ALERLDADDI EALRERRLQQ MKKMAEKRSR WISLGHSEYS EIPSEKDFFP VVKASERVVC HFYRENWPCK
101: VMDKHLNILA KQHIETRFVK LNAEKSPFLA EKLKIVVLPT LALIKNAKVD DYVVGFDELG GTDEFSTEEL EERLAKAQVI FYEGESSFNH ARSSAKTTRS
201: VRQSSRADSS DSE

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.