Factsheet for Zm00001d050225_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	Zm00001d002027_P002	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14790	Sorghum	cytosol	95.75	96.21
Os08t0250700-01	Rice	cytosol	87.74	88.57
HORVU3Hr1G089950.1	Barley	cytosol	87.74	88.15
TraesCS3D01G393400.1	Wheat	cytosol	84.43	85.24
TraesCS3A01G399200.1	Wheat	cytosol	83.96	84.76
TraesCS3B01G432200.1	Wheat	cytosol	83.96	84.76
GSMUA_Achr9P21300_001	Banana	cytosol	71.23	71.56
VIT_03s0091g00380.t01	Wine grape	cytosol	67.45	67.45
Solyc11g012730.1.1	Tomato	cytosol	67.45	67.45
PGSC0003DMT400034610	Potato	cytosol	67.92	67.29
KRH35706	Soybean	cytosol	67.45	67.14
CDX69045	Canola	cytosol	65.57	66.19
CDX75419	Canola	nucleus	65.09	65.71
Bra011517.1-P	Field mustard	cytosol	65.09	65.71
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	65.57	65.26
AT2G18990.1	Thale cress	cytosol	63.68	63.98
CDX72474	Canola	cytosol	32.55	62.16
KRH13153	Soybean	cytosol	44.81	61.69
AT3G25580.1	Thale cress	nucleus	60.38	60.95
CDX72476	Canola	cytosol	30.66	59.09
Bra017642.1-P	Field mustard	endoplasmic reticulum	39.15	51.55
CDY49291	Canola	mitochondrion	18.4	42.39
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	19.34	36.28
Zm00001d007600_P001	Maize	cytosol	33.96	31.44
Zm00001d048892_P001	Maize	extracellular	33.96	31.44
Zm00001d025839_P001	Maize	cytosol	24.53	30.95
Zm00001d033260_P001	Maize	plastid	19.81	27.27
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	16.98	25.9
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	16.98	25.9

Protein Annotations

EnsemblPlants:Zm00001d050225_P001	EnsemblPlants:Zm00001d050225_T001	EnsemblPlantsGene:Zm00001d050225	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11	PFAM:PF00085	ProteinID:AQK52147.1	SEG:seg
SUPFAM:SSF52833	UniParc:UPI0008437246	UniProt:A0A1D6Q0H2	MapMan:35.1	:	:

Description

Thioredoxin domain-containing protein 9 homolog

Coordinates

chr4:+:74666636..74669902

Molecular Weight (calculated)

23878.2 Da

IEP (calculated)

5.703

GRAVY (calculated)

-0.520

Length

212 amino acids

Sequence
(BLAST)

001: MDEVVSQILE KQVLSAAKAV EDKLDEEIAA LDRLDPDDIE ALRERRIQQM RRAAERRAKW RALGHGEYTE VPEKEFFSIA KASERLVCHF YRDNWPCKVV
101: DKHLSALAKQ HVETRFVKVH AEKAPFLTEK LRIVVLPTLA IVKNAKVEDY VVGFDELGGK DDFSTEDLEE RLARSQVVFL DGEGSAHASK QAAAATKRSV
201: RQSGTGDSSD SE

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.