Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G432200.1 | Wheat | cytosol | 93.36 | 93.81 |
| TraesCS3D01G393400.1 | Wheat | cytosol | 92.89 | 93.33 |
| TraesCS3A01G399200.1 | Wheat | cytosol | 92.89 | 93.33 |
| EES14790 | Sorghum | cytosol | 89.57 | 89.57 |
| Os08t0250700-01 | Rice | cytosol | 87.68 | 88.1 |
| Zm00001d050225_P001 | Maize | cytosol | 88.15 | 87.74 |
| VIT_03s0091g00380.t01 | Wine grape | cytosol | 68.72 | 68.4 |
| GSMUA_Achr9P21300_001 | Banana | cytosol | 68.25 | 68.25 |
| KRH35706 | Soybean | cytosol | 67.77 | 67.14 |
| Solyc11g012730.1.1 | Tomato | cytosol | 66.82 | 66.51 |
| PGSC0003DMT400034610 | Potato | cytosol | 66.82 | 65.89 |
| AT2G18990.1 | Thale cress | cytosol | 65.88 | 65.88 |
| CDX75419 | Canola | nucleus | 65.4 | 65.71 |
| KRG91066 | Soybean | cytoskeleton, cytosol, nucleus | 65.88 | 65.26 |
| CDX69045 | Canola | cytosol | 64.93 | 65.24 |
| Bra011517.1-P | Field mustard | cytosol | 64.45 | 64.76 |
| AT3G25580.1 | Thale cress | nucleus | 63.03 | 63.33 |
| KRH13153 | Soybean | cytosol | 45.97 | 62.99 |
| CDX72474 | Canola | cytosol | 31.75 | 60.36 |
| CDX72476 | Canola | cytosol | 29.86 | 57.27 |
| Bra017642.1-P | Field mustard | endoplasmic reticulum | 39.34 | 51.55 |
| CDY49291 | Canola | mitochondrion | 18.48 | 42.39 |
| HORVU7Hr1G029120.1 | Barley | golgi | 19.91 | 37.5 |
Protein Annotations
| EMBL:AK372587 | EnsemblPlants:HORVU3Hr1G089950.1 | EnsemblPlantsGene:HORVU3Hr1G089950 | Gene3D:3.40.30.10 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_domain | ncoils:Coil | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF11 | PFAM:PF00085 | SEG:seg |
| SUPFAM:SSF52833 | UniParc:UPI0002008728 | UniProt:F2E8W3 | MapMan:35.1 | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E8W3]
Coordinates
chrchr3H:-:630316488..630321102
Molecular Weight (calculated)
23745.3 Da
IEP (calculated)
6.375
GRAVY (calculated)
-0.489
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGVVSQILE KQVLSVAKAV EDKLDEEIAA LERLDPDDIE ALRERRMLQM RRAAERRAKW RALGHGEYTE VPEKEFFSAA KASERMVCHF YRDNWPCKVM
101: DKHMSILAKQ HVETRFIKVH AEKAPFLTEK LRVVVLPTLA LVKNAKVEDY VVGFDQLGGK DDFSTEDLEE RIAKAQVIFL DGEGPANASK QAAASKRSVR
201: QSGAGNSSDS D
101: DKHMSILAKQ HVETRFIKVH AEKAPFLTEK LRVVVLPTLA LVKNAKVEDY VVGFDQLGGK DDFSTEDLEE RIAKAQVIFL DGEGPANASK QAAASKRSVR
201: QSGAGNSSDS D
001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
Arabidopsis Description
TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.