Factsheet for PGSC0003DMT400034610

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT3G25580.1	PGSC0003DMT400069203	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012730.1.1	Tomato	cytosol	93.46	94.34
VIT_03s0091g00380.t01	Wine grape	cytosol	78.04	78.77
KRH35706	Soybean	cytosol	77.1	77.46
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	75.23	75.59
AT2G18990.1	Thale cress	cytosol	72.43	73.46
KRH13153	Soybean	cytosol	52.8	73.38
GSMUA_Achr9P21300_001	Banana	cytosol	71.96	72.99
CDX69045	Canola	cytosol	71.03	72.38
CDX75419	Canola	nucleus	70.56	71.9
AT3G25580.1	Thale cress	nucleus	70.09	71.43
Bra011517.1-P	Field mustard	cytosol	69.63	70.95
EES14790	Sorghum	cytosol	67.76	68.72
Os08t0250700-01	Rice	cytosol	66.82	68.1
Zm00001d050225_P001	Maize	cytosol	67.29	67.92
HORVU3Hr1G089950.1	Barley	cytosol	65.89	66.82
TraesCS3A01G399200.1	Wheat	cytosol	63.55	64.76
TraesCS3B01G432200.1	Wheat	cytosol	63.55	64.76
TraesCS3D01G393400.1	Wheat	cytosol	63.55	64.76
CDX72474	Canola	cytosol	33.18	63.96
CDX72476	Canola	cytosol	30.84	60.0
Bra017642.1-P	Field mustard	endoplasmic reticulum	37.85	50.31
CDY49291	Canola	mitochondrion	18.22	42.39
PGSC0003DMT400040052	Potato	cytosol	36.92	34.65

Protein Annotations

EntrezGene:102585617	Gene3D:3.40.30.10	MapMan:35.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	UniProt:M1B103
PFAM:PF00085	EnsemblPlantsGene:PGSC0003DMG400013301	PGSC:PGSC0003DMG400013301	EnsemblPlants:PGSC0003DMT400034610	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0002966FDC	RefSeq:XP_006352322.1	SEG:seg

Description

Thioredoxin domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013301]

Coordinates

chr11:-:231294..232433

Molecular Weight (calculated)

24554.2 Da

IEP (calculated)

5.460

GRAVY (calculated)

-0.531

Length

214 amino acids

Sequence
(BLAST)

001: MENAVQEIVA KQVLTVAKAV EDKLDEEIHA LDRLDLDDLE VLRERRLQQM KKMAEKRNRW ISLGHGEYSE IQAEKDFFSV VKASDRVVCH FYRENWPCKV
101: MDKHLSILAK QHIETRFVKI NAEKTPYLAE KLRIVVLPTL ALIKNAKVDN YLVGFDELGG TDEFNTEELE ERLAKADVII FEGESSKFLS KSKAQAQSNK
201: SVRQSSNPDS SDSE

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.