CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	KRH52586	AT1G71230.1	21798944
AT3G25580.1	KRH61926	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	93.51	67.61
KRH35706	Soybean	cytosol	90.26	65.26
VIT_03s0091g00380.t01	Wine grape	cytosol	79.22	57.55
AT2G18990.1	Thale cress	cytosol	75.32	54.98
AT3G25580.1	Thale cress	nucleus	74.03	54.29
GSMUA_Achr9P21300_001	Banana	cytosol	72.73	53.08
CDX69045	Canola	cytosol	72.08	52.86
Solyc11g012730.1.1	Tomato	cytosol	72.73	52.83
PGSC0003DMT400034610	Potato	cytosol	73.38	52.8
CDX75419	Canola	nucleus	71.43	52.38
Bra011517.1-P	Field mustard	cytosol	70.13	51.43
Os08t0250700-01	Rice	cytosol	62.99	46.19
HORVU3Hr1G089950.1	Barley	cytosol	62.99	45.97
TraesCS3D01G393400.1	Wheat	cytosol	62.34	45.71
TraesCS3B01G432200.1	Wheat	cytosol	62.34	45.71
TraesCS3A01G399200.1	Wheat	cytosol	62.34	45.71
EES14790	Sorghum	cytosol	62.34	45.5
Zm00001d050225_P001	Maize	cytosol	61.69	44.81
CDX72474	Canola	cytosol	22.73	31.53
Bra017642.1-P	Field mustard	endoplasmic reticulum	31.82	30.43
CDX72476	Canola	cytosol	20.78	29.09
KRH69862	Soybean	cytosol	35.06	23.38
KRH17436	Soybean	cytosol, extracellular	34.42	22.94
CDY49291	Canola	mitochondrion	3.25	5.43

Protein Annotations

EntrezGene:100816681	Gene3D:3.40.30.10	MapMan:35.1	EMBL:ACUP02009573	ncoils:Coil	EnsemblPlantsGene:GLYMA_15G219600
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454
UniProt:I1MID5	InterPro:IPR013766	EnsemblPlants:KRH13153	ProteinID:KRH13153	ProteinID:KRH13153.1	ProteinID:KRH13154.1
PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11	SUPFAM:SSF52833	TMHMM:TMhelix	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI00023D1FE2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:38433708..38438520

Molecular Weight (calculated)

17826.7 Da

IEP (calculated)

8.250

GRAVY (calculated)

-0.286

Length

154 amino acids

Sequence
(BLAST)

001: MDKGKIQEVI ENQVLTVAQA VEDKIDDEIA ALERLDADDI EALREHRLQQ MKKMAEKRSR WISLGHSEYS EIPSKKDFFS VVKASERVVC HFFRENWPCK
101: VMDKHLNILA KQHIETRFVK LNAEKSPFLA EKLKIIVLPT LALSLSGSLF FFGR

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.