Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75419 | Canola | nucleus | 99.05 | 99.05 |
| CDX69045 | Canola | cytosol | 98.57 | 98.57 |
| AT2G18990.1 | Thale cress | cytosol | 88.57 | 88.15 |
| AT3G25580.1 | Thale cress | nucleus | 86.19 | 86.19 |
| VIT_03s0091g00380.t01 | Wine grape | cytosol | 73.33 | 72.64 |
| KRH35706 | Soybean | cytosol | 73.33 | 72.3 |
| Solyc11g012730.1.1 | Tomato | cytosol | 71.9 | 71.23 |
| KRG91066 | Soybean | cytoskeleton, cytosol, nucleus | 71.9 | 70.89 |
| KRH13153 | Soybean | cytosol | 51.43 | 70.13 |
| PGSC0003DMT400034610 | Potato | cytosol | 70.95 | 69.63 |
| Bra017642.1-P | Field mustard | endoplasmic reticulum | 53.33 | 69.57 |
| GSMUA_Achr9P21300_001 | Banana | cytosol | 69.52 | 69.19 |
| EES14790 | Sorghum | cytosol | 66.19 | 65.88 |
| TraesCS3B01G432200.1 | Wheat | cytosol | 65.71 | 65.71 |
| TraesCS3D01G393400.1 | Wheat | cytosol | 65.71 | 65.71 |
| Os08t0250700-01 | Rice | cytosol | 65.24 | 65.24 |
| TraesCS3A01G399200.1 | Wheat | cytosol | 65.24 | 65.24 |
| Zm00001d050225_P001 | Maize | cytosol | 65.71 | 65.09 |
| HORVU3Hr1G089950.1 | Barley | cytosol | 64.76 | 64.45 |
| Bra038875.1-P | Field mustard | nucleus | 36.19 | 34.23 |
| Bra036844.1-P | Field mustard | cytosol | 36.19 | 33.04 |
Protein Annotations
| EnsemblPlants:Bra011517.1 | EnsemblPlants:Bra011517.1-P | EnsemblPlantsGene:Bra011517 | Gene3D:3.40.30.10 | InterPro:Phosducin_thioredoxin-like_dom | InterPro:Thioredoxin-like_sf |
| ncoils:Coil | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF11 | PFAM:PF02114 | SUPFAM:SSF52833 | UniParc:UPI00025458C0 |
| UniProt:M4D4W0 | MapMan:35.1 | : | : | : | : |
Description
AT3G25580 (E=1e-104) | thioredoxin-related
Coordinates
chrA01:+:1853403..1854469
Molecular Weight (calculated)
24389.1 Da
IEP (calculated)
6.412
GRAVY (calculated)
-0.790
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNPIQEILE KQLLTVAKAM EDKLDEEIAS LEKPDEDDLE VLRERRLQQM KKMAEKRKRW MSHGHGEYTE IPSEKDFFAA VKASERVVCH FYRENWPCKV
101: MDKHMGILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPNL AIIKNTKVDD YVVGFNELGG KDDFSTEDLE ERLARAQVIH YEGESSHKPK STTQTKRSVR
201: QSARSDSDSE
101: MDKHMGILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPNL AIIKNTKVDD YVVGFNELGG KDDFSTEDLE ERLARAQVIH YEGESSHKPK STTQTKRSVR
201: QSARSDSDSE
001: MANPIQEIIE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW MSIGHGEYSE IHSEKDFFSV VKSSERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YEGESSLKQK STTQVRRNVR
201: QSARSDSDSE
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YEGESSLKQK STTQVRRNVR
201: QSARSDSDSE
Arabidopsis Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LSU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.