Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G25580.1 | Thale cress | nucleus | 93.36 | 93.81 |
| CDX75419 | Canola | nucleus | 89.1 | 89.52 |
| CDX69045 | Canola | cytosol | 88.63 | 89.05 |
| Bra011517.1-P | Field mustard | cytosol | 88.15 | 88.57 |
| CDX72474 | Canola | cytosol | 44.55 | 84.68 |
| CDX72476 | Canola | cytosol | 41.23 | 79.09 |
| KRH13153 | Soybean | cytosol | 54.98 | 75.32 |
| KRH35706 | Soybean | cytosol | 75.83 | 75.12 |
| KRG91066 | Soybean | cytoskeleton, cytosol, nucleus | 73.46 | 72.77 |
| VIT_03s0091g00380.t01 | Wine grape | cytosol | 72.99 | 72.64 |
| PGSC0003DMT400034610 | Potato | cytosol | 73.46 | 72.43 |
| Solyc11g012730.1.1 | Tomato | cytosol | 72.04 | 71.7 |
| GSMUA_Achr9P21300_001 | Banana | cytosol | 69.19 | 69.19 |
| TraesCS3B01G432200.1 | Wheat | cytosol | 66.82 | 67.14 |
| TraesCS3A01G399200.1 | Wheat | cytosol | 66.82 | 67.14 |
| TraesCS3D01G393400.1 | Wheat | cytosol | 66.82 | 67.14 |
| Bra017642.1-P | Field mustard | endoplasmic reticulum | 50.71 | 66.46 |
| HORVU3Hr1G089950.1 | Barley | cytosol | 65.88 | 65.88 |
| Os08t0250700-01 | Rice | cytosol | 64.45 | 64.76 |
| EES14790 | Sorghum | cytosol | 64.45 | 64.45 |
| Zm00001d050225_P001 | Maize | cytosol | 63.98 | 63.68 |
| CDY49291 | Canola | mitochondrion | 25.59 | 58.7 |
| AT5G66410.1 | Thale cress | cytosol | 36.49 | 33.48 |
| AT3G50960.1 | Thale cress | cytosol | 36.02 | 33.04 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | EntrezGene:816416 | ProteinID:AAM14890.1 | ProteinID:AEC06836.1 | EMBL:AK119157 |
| ArrayExpress:AT2G18990 | EnsemblPlantsGene:AT2G18990 | RefSeq:AT2G18990 | TAIR:AT2G18990 | RefSeq:AT2G18990-TAIR-G | EnsemblPlants:AT2G18990.1 |
| TAIR:AT2G18990.1 | EMBL:BT005230 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008479 | GO:GO:0008616 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019725 |
| GO:GO:0045454 | InterPro:IPR013766 | RefSeq:NP_179489.1 | UniProt:O64628 | PFAM:PF00085 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF11 | UniProt:Q541V3 | SUPFAM:SSF52833 |
| Symbol:TXND9 | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI000000420E | SEG:seg | : |
Description
TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
Coordinates
chr2:-:8238495..8240018
Molecular Weight (calculated)
24452.3 Da
IEP (calculated)
6.803
GRAVY (calculated)
-0.644
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.