Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 cytosol: 30477269
extracellular: 29876421
gfp PMID: 30477269 doi
MM Mathioudakis, S Khechmar, CA Owen, V Medina, K Ben Mansour, W Tomaszewska, T Spanos, PF Sarris, IC Livieratos
Departament de Producció Vegetal i Ciència Forestal, Universitat de Lleida, 25198 Lleida, Spain. medinap@pvcf.udl.cat., Department of Biosciences, College of Life and Environmental Sciences, University of Exeter, Exeter EX4 4QD, UK. p.sarris@imbb.forth.gr., Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, GR-70013 Heraklion, Greece. p.sarris@imbb.forth.gr., Mediterranean Agronomic Institute of Chania, Department of Sustainable Agriculture, Alsylio Agrokepio, GR-73100 Chania, Greece. ikatomaszewska@gmail.com., Mediterranean Agronomic Institute of Chania, Department of Sustainable Agriculture, Alsylio Agrokepio, GR-73100 Chania, Greece. karina79@hotmail.fr., Mediterranean Agronomic Institute of Chania, Department of Sustainable Agriculture, Alsylio Agrokepio, GR-73100 Chania, Greece. kh.souhila@live.fr., Mediterranean Agronomic Institute of Chania, Department of Sustainable Agriculture, Alsylio Agrokepio, GR-73100 Chania, Greece. livieratos@maich.gr., Mediterranean Agronomic Institute of Chania, Department of Sustainable Agriculture, Alsylio Agrokepio, GR-73100 Chania, Greece. manth82@yahoo.gr., Mediterranean Agronomic Institute of Chania, Department of Sustainable Agriculture, Alsylio Agrokepio, GR-73100 Chania, Greece. owen@maich.gr., Mediterranean Agronomic Institute of Chania, Department of Sustainable Agriculture, Alsylio Agrokepio, GR-73100 Chania, Greece. theodor@maich.gr.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G25580.1 Solyc06g073150.2.1 AT1G71230.1 21798944
AT3G25580.1 Solyc11g017300.1.1 AT1G71230.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400034610 Potato cytosol 94.34 93.46
VIT_03s0091g00380.t01 Wine grape cytosol 80.19 80.19
KRG91066 Soybean cytoskeleton, cytosol, nucleus 77.83 77.46
KRH35706 Soybean cytosol 76.42 76.06
AT3G25580.1 Thale cress nucleus 73.11 73.81
GSMUA_Achr9P21300_001 Banana cytosol 73.11 73.46
CDX69045 Canola cytosol 72.64 73.33
CDX75419 Canola nucleus 72.17 72.86
KRH13153 Soybean cytosol 52.83 72.73
AT2G18990.1 Thale cress cytosol 71.7 72.04
Bra011517.1-P Field mustard cytosol 71.23 71.9
EES14790 Sorghum cytosol 68.4 68.72
Os08t0250700-01 Rice cytosol 67.92 68.57
Zm00001d050225_P001 Maize cytosol 67.45 67.45
HORVU3Hr1G089950.1 Barley cytosol 66.51 66.82
TraesCS3A01G399200.1 Wheat cytosol 64.15 64.76
TraesCS3B01G432200.1 Wheat cytosol 64.15 64.76
TraesCS3D01G393400.1 Wheat cytosol 64.15 64.76
CDX72476 Canola cytosol 33.02 63.64
CDX72474 Canola cytosol 32.55 62.16
Bra017642.1-P Field mustard endoplasmic reticulum 41.04 54.04
CDY49291 Canola mitochondrion 21.23 48.91
Solyc02g062540.2.1 Tomato cytosol 39.62 36.84
Protein Annotations
Gene3D:3.40.30.10MapMan:35.1ncoils:CoilGO:GO:0003674GO:GO:0003824GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0008150GO:GO:0008152
GO:GO:0008479GO:GO:0008616GO:GO:0009058GO:GO:0009987GO:GO:0016740GO:GO:0019725
GO:GO:0045454InterPro:IPR013766UniProt:K4D677PFAM:PF00085PANTHER:PTHR21148PANTHER:PTHR21148:SF11
SUPFAM:SSF52833EnsemblPlantsGene:Solyc11g012730.1EnsemblPlants:Solyc11g012730.1.1InterPro:Thioredoxin-like_sfInterPro:Thioredoxin_domainUniParc:UPI000276A107
SEG:seg:::::
Description
No Description!
Coordinates
chr11:+:5491671..5492554
Molecular Weight (calculated)
24296.0 Da
IEP (calculated)
5.744
GRAVY (calculated)
-0.497
Length
212 amino acids
Sequence
(BLAST)
001: MENAVQEIVA KQVLTVAKAV EDKLDEEIHA LDRLDLDDLE VLRERRLQQM KKMAEKRNRW LSLGHGEYSE IQAEKDFFSV VKASDRVVCH FYRENWPCKV
101: MDKHLSILAK QHIETRFVKI NAEKAPYLAE KLRIVVLPTL ALIKNAKVDN YLVGFDELGG TDEFSTEELE ERLAKADVII FEGESSKFLS KSKAQAKKSV
201: RQSSNPDSSD SE
Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)
001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
Arabidopsis Description
TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.