Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G18990.1 | Thale cress | cytosol | 93.81 | 93.36 |
| CDX75419 | Canola | nucleus | 87.14 | 87.14 |
| CDX69045 | Canola | cytosol | 86.67 | 86.67 |
| Bra011517.1-P | Field mustard | cytosol | 86.19 | 86.19 |
| CDX72476 | Canola | cytosol | 41.43 | 79.09 |
| CDX72474 | Canola | cytosol | 41.43 | 78.38 |
| KRG91066 | Soybean | cytoskeleton, cytosol, nucleus | 75.24 | 74.18 |
| KRH13153 | Soybean | cytosol | 54.29 | 74.03 |
| VIT_03s0091g00380.t01 | Wine grape | cytosol | 74.29 | 73.58 |
| Solyc11g012730.1.1 | Tomato | cytosol | 73.81 | 73.11 |
| KRH35706 | Soybean | cytosol | 73.81 | 72.77 |
| Bra017642.1-P | Field mustard | endoplasmic reticulum | 53.81 | 70.19 |
| PGSC0003DMT400034610 | Potato | cytosol | 71.43 | 70.09 |
| GSMUA_Achr9P21300_001 | Banana | cytosol | 67.14 | 66.82 |
| CDY49291 | Canola | mitochondrion | 29.05 | 66.3 |
| TraesCS3A01G399200.1 | Wheat | cytosol | 64.29 | 64.29 |
| TraesCS3B01G432200.1 | Wheat | cytosol | 64.29 | 64.29 |
| TraesCS3D01G393400.1 | Wheat | cytosol | 64.29 | 64.29 |
| HORVU3Hr1G089950.1 | Barley | cytosol | 63.33 | 63.03 |
| Os08t0250700-01 | Rice | cytosol | 61.9 | 61.9 |
| EES14790 | Sorghum | cytosol | 60.95 | 60.66 |
| Zm00001d050225_P001 | Maize | cytosol | 60.95 | 60.38 |
| AT5G66410.1 | Thale cress | cytosol | 36.67 | 33.48 |
| AT3G50960.1 | Thale cress | cytosol | 36.19 | 33.04 |
Protein Annotations
| Gene3D:3.40.30.10 | MapMan:35.1 | EntrezGene:822145 | ProteinID:AEE77034.1 | ArrayExpress:AT3G25580 | EnsemblPlantsGene:AT3G25580 |
| RefSeq:AT3G25580 | TAIR:AT3G25580 | RefSeq:AT3G25580-TAIR-G | EnsemblPlants:AT3G25580.1 | TAIR:AT3G25580.1 | ProteinID:BAB01329.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008479 | GO:GO:0008616 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0019725 | GO:GO:0045454 | InterPro:IPR013766 |
| RefSeq:NP_566772.1 | PFAM:PF00085 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF11 | UniProt:Q9LSU4 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain | UniParc:UPI000009E8B5 | SEG:seg | : | : |
Description
Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LSU4]
Coordinates
chr3:+:9292345..9294438
Molecular Weight (calculated)
24444.3 Da
IEP (calculated)
6.803
GRAVY (calculated)
-0.670
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPIQEIIE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW MSIGHGEYSE IHSEKDFFSV VKSSERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YEGESSLKQK STTQVRRNVR
201: QSARSDSDSE
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YEGESSLKQK STTQVRRNVR
201: QSARSDSDSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.