CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	KXG27287	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050225_P001	Maize	cytosol	96.21	95.75
Os08t0250700-01	Rice	cytosol	89.57	90.0
HORVU3Hr1G089950.1	Barley	cytosol	89.57	89.57
TraesCS3D01G393400.1	Wheat	cytosol	86.73	87.14
TraesCS3B01G432200.1	Wheat	cytosol	86.26	86.67
TraesCS3A01G399200.1	Wheat	cytosol	85.78	86.19
GSMUA_Achr9P21300_001	Banana	cytosol	72.04	72.04
KRH35706	Soybean	cytosol	69.67	69.01
VIT_03s0091g00380.t01	Wine grape	cytosol	69.19	68.87
Solyc11g012730.1.1	Tomato	cytosol	68.72	68.4
PGSC0003DMT400034610	Potato	cytosol	68.72	67.76
CDX69045	Canola	cytosol	66.35	66.67
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	66.82	66.2
CDX75419	Canola	nucleus	65.88	66.19
Bra011517.1-P	Field mustard	cytosol	65.88	66.19
AT2G18990.1	Thale cress	cytosol	64.45	64.45
KRH13153	Soybean	cytosol	45.5	62.34
CDX72474	Canola	cytosol	32.23	61.26
AT3G25580.1	Thale cress	nucleus	60.66	60.95
CDX72476	Canola	cytosol	30.81	59.09
Bra017642.1-P	Field mustard	endoplasmic reticulum	38.86	50.93
CDY49291	Canola	mitochondrion	18.01	41.3
EES08806	Sorghum	cytosol	35.07	32.31

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EntrezGene:8073257	UniProt:C5YJK1	EnsemblPlants:EES14790	ProteinID:EES14790
ProteinID:EES14790.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766
PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11	EnsemblPlantsGene:SORBI_3007G091000	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0001A87F45	RefSeq:XP_002445295.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:14476840..14486355

Molecular Weight (calculated)

23861.2 Da

IEP (calculated)

5.258

GRAVY (calculated)

-0.520

Length

211 amino acids

Sequence
(BLAST)

001: MDEVVSQILE KQVLSAAKAV EDKLDEEIAA LDRLDPDDIE ALRERRIQQM RRAAERRAKW RALGHGEYTE VPEKEFFSAA KASERLVCHF YRDNWPCKVV
101: DKHLSILAKQ HVETRFVKVH AEKAPFLTEK LRIVVLPTLA IVKNAKVEDY VVGFDELGGK DDFSTEDLEE RLAKSQVIFL DGEGSAYAAK QAAATKRSVR
201: QSDTGDSSDS E

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.