Factsheet for GSMUA_Achr9P21300_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	GSMUA_Achr10P...	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g00380.t01	Wine grape	cytosol	76.3	75.94
KRH35706	Soybean	cytosol	75.83	75.12
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	75.36	74.65
Os08t0250700-01	Rice	cytosol	72.99	73.33
Solyc11g012730.1.1	Tomato	cytosol	73.46	73.11
KRH13153	Soybean	cytosol	53.08	72.73
EES14790	Sorghum	cytosol	72.04	72.04
PGSC0003DMT400034610	Potato	cytosol	72.99	71.96
Zm00001d050225_P001	Maize	cytosol	71.56	71.23
CDX69045	Canola	cytosol	70.62	70.95
CDX75419	Canola	nucleus	70.14	70.48
Bra011517.1-P	Field mustard	cytosol	69.19	69.52
AT2G18990.1	Thale cress	cytosol	69.19	69.19
HORVU3Hr1G089950.1	Barley	cytosol	68.25	68.25
AT3G25580.1	Thale cress	nucleus	66.82	67.14
TraesCS3B01G432200.1	Wheat	cytosol	65.88	66.19
TraesCS3D01G393400.1	Wheat	cytosol	65.88	66.19
TraesCS3A01G399200.1	Wheat	cytosol	65.4	65.71
CDX72474	Canola	cytosol	32.7	62.16
CDX72476	Canola	cytosol	31.75	60.91
Bra017642.1-P	Field mustard	endoplasmic reticulum	37.91	49.69
CDY49291	Canola	mitochondrion	18.01	41.3
GSMUA_Achr2P14840_001	Banana	cytosol	34.12	34.45

Protein Annotations

EnsemblPlants:GSMUA_Achr9P21300_001	EnsemblPlants:GSMUA_Achr9T21300_001	EnsemblPlantsGene:GSMUA_Achr9G21300_001	Gene3D:3.40.30.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	ncoils:Coil	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11	PFAM:PF00085	SEG:seg
SUPFAM:SSF52833	UniParc:UPI0002954A9B	UniProt:M0U289	MapMan:35.1	:	:

Description

Thioredoxin domain-containing protein 9 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G21300_001]

Coordinates

chr9:+:26421133..26424874

Molecular Weight (calculated)

24078.5 Da

IEP (calculated)

5.250

GRAVY (calculated)

-0.533

Length

211 amino acids

Sequence
(BLAST)

001: MDATQAKQII EQQVLTVAKA VEDKLDDEIA AIDRLDLDDL EALRERRLQQ LKKMAEKRSR WISLGHGEYS EIPEKEFFAA VKASDRVVCH FYRENWPCKV
101: MDKHLSVLAK QHIETRFLKI HAEKSPFLTE KLRIAVLPTL ALVKNAKVED YVVGFDELGG TDDFSTEELE ERLARSQVIL FDGEASSNPV KSSRTKRSVR
201: QSETADSSDS E

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.