Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49291 | Canola | mitochondrion | 44.72 | 78.26 |
| AT3G25580.1 | Thale cress | nucleus | 70.19 | 53.81 |
| Bra011517.1-P | Field mustard | cytosol | 69.57 | 53.33 |
| AT2G18990.1 | Thale cress | cytosol | 66.46 | 50.71 |
| VIT_03s0091g00380.t01 | Wine grape | cytosol | 57.14 | 43.4 |
| KRG91066 | Soybean | cytoskeleton, cytosol, nucleus | 55.9 | 42.25 |
| Solyc11g012730.1.1 | Tomato | cytosol | 54.04 | 41.04 |
| KRH35706 | Soybean | cytosol | 54.04 | 40.85 |
| Os08t0250700-01 | Rice | cytosol | 52.8 | 40.48 |
| TraesCS3D01G393400.1 | Wheat | cytosol | 52.17 | 40.0 |
| TraesCS3B01G432200.1 | Wheat | cytosol | 52.17 | 40.0 |
| TraesCS3A01G399200.1 | Wheat | cytosol | 52.17 | 40.0 |
| HORVU3Hr1G089950.1 | Barley | cytosol | 51.55 | 39.34 |
| Zm00001d050225_P001 | Maize | cytosol | 51.55 | 39.15 |
| EES14790 | Sorghum | cytosol | 50.93 | 38.86 |
| GSMUA_Achr9P21300_001 | Banana | cytosol | 49.69 | 37.91 |
| PGSC0003DMT400034610 | Potato | cytosol | 50.31 | 37.85 |
| KRH13153 | Soybean | cytosol | 30.43 | 31.82 |
| Bra038875.1-P | Field mustard | nucleus | 31.68 | 22.97 |
| Bra036844.1-P | Field mustard | cytosol | 29.81 | 20.87 |
Protein Annotations
| EnsemblPlants:Bra017642.1 | EnsemblPlants:Bra017642.1-P | EnsemblPlantsGene:Bra017642 | Gene3D:3.40.30.10 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR21148 |
| PANTHER:PTHR21148:SF11 | SUPFAM:SSF52833 | UniParc:UPI0002541200 | UniProt:M4DMB0 | MapMan:35.1 | : |
Description
AT2G18990 (E=1e-044) TXND9 | TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG)
Coordinates
chrA03:-:29493127..29494031
Molecular Weight (calculated)
18218.5 Da
IEP (calculated)
4.537
GRAVY (calculated)
-0.444
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDPYSRGTV FTLLLNLRGM ILDLFSWQIL EKQLLTVAKA MEDKLDEEIA SLEKPDADDL EHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALLKNTKVDD
101: YVAGFNELGG KDDFSTDDLE DRLARAQVIH YEGESSSHKV KSMTQARRSV RQSANSDSDS E
101: YVAGFNELGG KDDFSTDDLE DRLARAQVIH YEGESSSHKV KSMTQARRSV RQSANSDSDS E
001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
Arabidopsis Description
TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.