CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	KRH52586	AT1G71230.1	21798944
AT3G25580.1	KRH61926	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13153	Soybean	cytosol	67.61	93.51
KRH35706	Soybean	cytosol	93.43	93.43
VIT_03s0091g00380.t01	Wine grape	cytosol	83.1	83.49
Solyc11g012730.1.1	Tomato	cytosol	77.46	77.83
GSMUA_Achr9P21300_001	Banana	cytosol	74.65	75.36
AT3G25580.1	Thale cress	nucleus	74.18	75.24
PGSC0003DMT400034610	Potato	cytosol	75.59	75.23
AT2G18990.1	Thale cress	cytosol	72.77	73.46
CDX69045	Canola	cytosol	72.3	73.33
CDX75419	Canola	nucleus	71.83	72.86
Bra011517.1-P	Field mustard	cytosol	70.89	71.9
Os08t0250700-01	Rice	cytosol	66.2	67.14
EES14790	Sorghum	cytosol	66.2	66.82
CDX72476	Canola	cytosol	34.27	66.36
HORVU3Hr1G089950.1	Barley	cytosol	65.26	65.88
Zm00001d050225_P001	Maize	cytosol	65.26	65.57
CDX72474	Canola	cytosol	33.8	64.86
TraesCS3A01G399200.1	Wheat	cytosol	63.85	64.76
TraesCS3B01G432200.1	Wheat	cytosol	63.85	64.76
TraesCS3D01G393400.1	Wheat	cytosol	63.85	64.76
Bra017642.1-P	Field mustard	endoplasmic reticulum	42.25	55.9
CDY49291	Canola	mitochondrion	22.07	51.09
KRH69862	Soybean	cytosol	35.21	32.47
KRH17436	Soybean	cytosol, extracellular	34.74	32.03

Protein Annotations

EntrezGene:100812734	Gene3D:3.40.30.10	MapMan:35.1	EMBL:ACUP02012660	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G131000
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454	UniProt:I1NG02	InterPro:IPR013766
EnsemblPlants:KRG91066	ProteinID:KRG91066	ProteinID:KRG91066.1	PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233DCA2	:	:

Description

hypothetical protein

Coordinates

chr20:-:37168708..37170315

Molecular Weight (calculated)

24437.0 Da

IEP (calculated)

5.259

GRAVY (calculated)

-0.521

Length

213 amino acids

Sequence
(BLAST)

001: MDKGKIQEVI ENQVLTVAQA VEDKIDDEIA ALERLDADDI EALRERRLQQ MKKMAEKRSR WISLGHSEYS EIPSEKDFFS VVKASERVVC HFFRENWPCK
101: VMDKHLNILA KQHIETRFVK LNAEKSPFLA EKLKIIVLPT LALIKNAKVD DYVVGFDELG GTDEFSTEEL EERLAKAQVI FYEGESSFNH VRSSAKTTRS
201: VRQSSRADSS DSE

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.