Factsheet for VIT_03s0091g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	83.49	83.1
KRH35706	Soybean	cytosol	82.08	81.69
Solyc11g012730.1.1	Tomato	cytosol	80.19	80.19
KRH13153	Soybean	cytosol	57.55	79.22
PGSC0003DMT400034610	Potato	cytosol	78.77	78.04
GSMUA_Achr9P21300_001	Banana	cytosol	75.94	76.3
CDX69045	Canola	cytosol	74.06	74.76
AT3G25580.1	Thale cress	nucleus	73.58	74.29
CDX75419	Canola	nucleus	73.58	74.29
Bra011517.1-P	Field mustard	cytosol	72.64	73.33
AT2G18990.1	Thale cress	cytosol	72.64	72.99
Os08t0250700-01	Rice	cytosol	69.34	70.0
EES14790	Sorghum	cytosol	68.87	69.19
HORVU3Hr1G089950.1	Barley	cytosol	68.4	68.72
Zm00001d050225_P001	Maize	cytosol	67.45	67.45
TraesCS3B01G432200.1	Wheat	cytosol	66.04	66.67
TraesCS3D01G393400.1	Wheat	cytosol	66.04	66.67
TraesCS3A01G399200.1	Wheat	cytosol	65.57	66.19
CDX72476	Canola	cytosol	33.49	64.55
CDX72474	Canola	cytosol	32.55	62.16
Bra017642.1-P	Field mustard	endoplasmic reticulum	43.4	57.14
CDY49291	Canola	mitochondrion	20.28	46.74
VIT_04s0023g02390.t01	Wine grape	cytosol	35.38	32.61
VIT_14s0036g00970.t01	Wine grape	plasma membrane	34.91	30.33

Protein Annotations

EntrezGene:100262780	wikigene:100262780	Gene3D:3.40.30.10	MapMan:35.1	EMBL:AM473896	ProteinID:CAN66100
ProteinID:CAN66100.1	ProteinID:CBI22498	ProteinID:CBI22498.3	ncoils:Coil	UniProt:D7SXU8	EMBL:FN595242
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616	GO:GO:0009058
GO:GO:0009987	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	EntrezGene:LOC100262780
wikigene:LOC100262780	PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11	SUPFAM:SSF52833	TIGR:TC56954
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI0001982E08	ArrayExpress:VIT_03s0091g00380	EnsemblPlantsGene:VIT_03s0091g00380	EnsemblPlants:VIT_03s0091g00380.t01
unigene:Vvi.17671	RefSeq:XP_002271696	RefSeq:XP_002271696.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:6699445..6705656

Molecular Weight (calculated)

24121.7 Da

IEP (calculated)

5.457

GRAVY (calculated)

-0.479

Length

212 amino acids

Sequence
(BLAST)

001: MENPNVQEIL EKQVLTVAKA VEDKIDEEIA ALERLDLDDI EALRERRLQQ MKKMAEKRSR WISLGHGEYS EIPSEKDFFA AVKASERVVC HFYRPNWPCK
101: VVDKHLSILA KKHIETRFVK INAEKSPFLA EKLKIVVLPT LALIKNAKVD DYVVGFDELG GTDEFSTEEL EERLAKAQVI IFEGESSLHA SKSSSQPRSV
201: RQSSNSYSSD SD

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.