Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72474 | Canola | cytosol | 80.91 | 80.18 |
| CDY49291 | Canola | mitochondrion | 54.55 | 65.22 |
| CDX69045 | Canola | cytosol | 80.91 | 42.38 |
| CDX75419 | Canola | nucleus | 80.91 | 42.38 |
| AT3G25580.1 | Thale cress | nucleus | 79.09 | 41.43 |
| AT2G18990.1 | Thale cress | cytosol | 79.09 | 41.23 |
| KRH35706 | Soybean | cytosol | 66.36 | 34.27 |
| KRG91066 | Soybean | cytoskeleton, cytosol, nucleus | 66.36 | 34.27 |
| VIT_03s0091g00380.t01 | Wine grape | cytosol | 64.55 | 33.49 |
| Solyc11g012730.1.1 | Tomato | cytosol | 63.64 | 33.02 |
| Os08t0250700-01 | Rice | cytosol | 61.82 | 32.38 |
| GSMUA_Achr9P21300_001 | Banana | cytosol | 60.91 | 31.75 |
| TraesCS3B01G432200.1 | Wheat | cytosol | 60.0 | 31.43 |
| TraesCS3A01G399200.1 | Wheat | cytosol | 60.0 | 31.43 |
| TraesCS3D01G393400.1 | Wheat | cytosol | 60.0 | 31.43 |
| PGSC0003DMT400034610 | Potato | cytosol | 60.0 | 30.84 |
| EES14790 | Sorghum | cytosol | 59.09 | 30.81 |
| Zm00001d050225_P001 | Maize | cytosol | 59.09 | 30.66 |
| HORVU3Hr1G089950.1 | Barley | cytosol | 57.27 | 29.86 |
| KRH13153 | Soybean | cytosol | 29.09 | 20.78 |
| CDY57635 | Canola | cytosol | 35.45 | 16.96 |
| CDY26529 | Canola | cytosol | 35.45 | 16.96 |
| CDX77968 | Canola | cytosol | 34.55 | 16.52 |
| CDX73765 | Canola | cytosol | 34.55 | 16.52 |
Protein Annotations
| EnsemblPlants:CDX72476 | EnsemblPlantsGene:GSBRNA2T00100002001 | Gene3D:3.40.30.10 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF11 |
| ProteinID:CDX72476 | ProteinID:CDX72476.1 | SUPFAM:SSF52833 | UniParc:UPI0004EE8D6F | MapMan:35.1 | : |
Description
BnaC07g44980D
Coordinates
chrLK031796:-:1485695..1486362
Molecular Weight (calculated)
12605.8 Da
IEP (calculated)
5.694
GRAVY (calculated)
-0.631
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKQHIETRF VKIQAEKSPF LAEKLKIVVL PTLALIKNTK VDDYVVGFNE LGGRDDFSTE DLEERLARAQ VIHYEGESSS HKVKSMYWEL SMTQARRSVR
101: QSANSDSDSE
101: QSANSDSDSE
001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
Arabidopsis Description
TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.