Factsheet for Os08t0250700-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	Os04t0654700-02	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14790	Sorghum	cytosol	90.0	89.57
Zm00001d050225_P001	Maize	cytosol	88.57	87.74
HORVU3Hr1G089950.1	Barley	cytosol	88.1	87.68
TraesCS3D01G393400.1	Wheat	cytosol	85.71	85.71
TraesCS3B01G432200.1	Wheat	cytosol	85.24	85.24
TraesCS3A01G399200.1	Wheat	cytosol	84.76	84.76
GSMUA_Achr9P21300_001	Banana	cytosol	73.33	72.99
VIT_03s0091g00380.t01	Wine grape	cytosol	70.0	69.34
KRH35706	Soybean	cytosol	69.05	68.08
Solyc11g012730.1.1	Tomato	cytosol	68.57	67.92
PGSC0003DMT400034610	Potato	cytosol	68.1	66.82
CDX69045	Canola	cytosol	66.67	66.67
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	67.14	66.2
CDX75419	Canola	nucleus	66.19	66.19
Bra011517.1-P	Field mustard	cytosol	65.24	65.24
CDX72474	Canola	cytosol	34.29	64.86
AT2G18990.1	Thale cress	cytosol	64.76	64.45
KRH13153	Soybean	cytosol	46.19	62.99
AT3G25580.1	Thale cress	nucleus	61.9	61.9
CDX72476	Canola	cytosol	32.38	61.82
Bra017642.1-P	Field mustard	endoplasmic reticulum	40.48	52.8
CDY49291	Canola	mitochondrion	20.0	45.65
Os11t0604700-00	Rice	cytosol	33.33	30.43
Os05t0255600-01	Rice	cytosol	32.86	30.0

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EntrezGene:4345081	EMBL:AK102125	EMBL:AK109193	ProteinID:BAD05857.1
ProteinID:BAF23289.1	ProteinID:BAT04560.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008479
GO:GO:0008616	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0019725	GO:GO:0045454
InterPro:IPR013766	EnsemblPlantsGene:Os08g0250700	EnsemblPlants:Os08t0250700-01	PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF11
UniProt:Q6YW09	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000022F32E	RefSeq:XP_015650854.1
SEG:seg	:	:	:	:	:

Description

Thioredoxin domain 2 containing protein. (Os08t0250700-01)

Coordinates

chr8:+:9191621..9201077

Molecular Weight (calculated)

23772.3 Da

IEP (calculated)

6.263

GRAVY (calculated)

-0.520

Length

210 amino acids

Sequence
(BLAST)

001: MDQSIVGQIL EKQVLSVAKA VEDKLDEQIA ALDRLDPDDI EALRERRILQ MRRAAERRAK WRALGHGEYG EVPEKEFFAA AKASDRLVCH FYRDNWPCKV
101: MDKHLSILAK QHVETRFVKV HAEKAPFLTE KLRIVVLPTL ALVKNTKVED YVVGFDELGG KDDFSTEDLE ERLAKAQVIF LDGEGPAHAS KQATKRSVRQ
201: SDTGNSSDSE

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.