Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002027_P002 | Maize | extracellular | 93.33 | 92.82 |
| TraesCS2D01G505300.1 | Wheat | golgi, unclear | 92.22 | 91.21 |
| TraesCS2A01G504600.1 | Wheat | cytosol | 92.22 | 91.21 |
| KXG27287 | Sorghum | cytosol | 93.33 | 90.08 |
| HORVU1Hr1G008160.1 | Barley | cytosol | 37.5 | 88.82 |
| HORVU7Hr1G078010.1 | Barley | cytosol | 32.78 | 86.76 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 35.83 | 83.23 |
| GSMUA_Achr10P... | Banana | cytosol | 83.06 | 81.25 |
| Solyc06g073150.2.1 | Tomato | cytosol | 81.11 | 79.56 |
| PGSC0003DMT400069203 | Potato | cytosol | 81.11 | 79.56 |
| Solyc11g017300.1.1 | Tomato | cytosol | 80.56 | 79.02 |
| PGSC0003DMT400023896 | Potato | cytosol | 80.28 | 78.75 |
| Bra024548.1-P | Field mustard | cytosol | 77.5 | 78.37 |
| AT1G22920.1 | Thale cress | cytosol | 77.5 | 78.15 |
| KRH61926 | Soybean | nucleus | 81.11 | 78.07 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 36.11 | 77.38 |
| AT1G71230.1 | Thale cress | cytosol | 76.94 | 77.37 |
| Bra012351.1-P | Field mustard | cytosol | 74.44 | 75.28 |
| KRH52586 | Soybean | cytosol, nucleus | 80.83 | 71.15 |
| CDY12502 | Canola | cytosol | 54.44 | 55.52 |
| VIT_16s0100g00150.t01 | Wine grape | cytosol, extracellular, plastid | 9.17 | 49.25 |
| HORVU4Hr1G047410.2 | Barley | cytosol, mitochondrion, peroxisome | 26.94 | 38.34 |
| Os05t0371200-01 | Rice | cytosol | 24.72 | 28.99 |
| Os01t0267200-01 | Rice | plasma membrane, plastid | 24.72 | 28.99 |
| Os06t0703600-01 | Rice | cytosol | 23.61 | 27.6 |
Protein Annotations
| MapMan:19.2.3.3.1.5 | Gene3D:3.40.140.10 | EntrezGene:4337249 | ProteinID:BAC22747.1 | ProteinID:BAF16026.1 | ProteinID:BAS91398.1 |
| ProteinID:CAE01552.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom |
| MEROPS:M67.002 | InterPro:MPN | EnsemblPlantsGene:Os04g0654700 | EnsemblPlants:Os04t0654700-02 | PFAM:PF01398 | PFscan:PS50249 |
| PANTHER:PTHR10410 | PANTHER:PTHR10410:SF14 | UniProt:Q8H936 | SMART:SM00232 | SUPFAM:SSF102712 | UniParc:UPI000009D9A3 |
| RefSeq:XP_015637190.1 | SEG:seg | : | : | : | : |
Description
JAB1 Transcriptional CoactivatorSimilar to COP9 signalosome complex subunit 5b (EC 3.4.-.-) (Signalosome subunit 5b) (Jun activation domain-binding homolog 1). (Os04t0654700-01);Similar to COP9 signalosome complex subunit 5b (EC 3.4.-.-) (Signalosome subunit 5b) (Jun activation domain-binding homolog 1). (Os04t0654700-02)
Coordinates
chr4:+:33394508..33397972
Molecular Weight (calculated)
40039.3 Da
IEP (calculated)
4.922
GRAVY (calculated)
-0.398
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPTSSAAMA RQTWELENNI PAAASDPDAL DAIYRYDEAA QARVQQEKPW ANDPHPFRRA KISALALLKM VVHARAGGTI EVMGLMQGKC EGDAIVVMDA
101: FALPVEGTET RVNAQADAYE YMVEYSTINK QAGRLENVVG WYHSHPGYGC WLSGIDVSTQ MLNQQFQEPF LAVVIDPTRT VSAGKVEIGA FRTYPKDYKP
201: PDEPVSEYQT IPLNKIEDFG VHCKQYYALD ITYFKSSLDS HLLDLLWNKY WVNTLSSSPL LGNRDYVAGQ IFDLADKLEQ AEGQLAHSRY GMLMPSQRKK
301: EQEESPLAKV TRDSSKITAE QVHGLMSQVI KDILFNSVHP SNKASTSAPD SSGPEPMVEA
101: FALPVEGTET RVNAQADAYE YMVEYSTINK QAGRLENVVG WYHSHPGYGC WLSGIDVSTQ MLNQQFQEPF LAVVIDPTRT VSAGKVEIGA FRTYPKDYKP
201: PDEPVSEYQT IPLNKIEDFG VHCKQYYALD ITYFKSSLDS HLLDLLWNKY WVNTLSSSPL LGNRDYVAGQ IFDLADKLEQ AEGQLAHSRY GMLMPSQRKK
301: EQEESPLAKV TRDSSKITAE QVHGLMSQVI KDILFNSVHP SNKASTSAPD SSGPEPMVEA
001: MEGSSSAIAR KTWELENNIL PVEPTDSASD SIFHYDDASQ AKIQQEKPWA SDPNYFKRVH ISALALLKMV VHARSGGTIE IMGLMQGKTE GDTIIVMDAF
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
101: ALPVEGTETR VNAQSDAYEY MVEYSQTSKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQM LNQQYQEPFL AVVIDPTRTV SAGKVEIGAF RTYPEGHKIS
201: DDHVSEYQTI PLNKIEDFGV HCKQYYSLDI TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESQLANSRYG GIAPAGHQRR
301: KEDEPQLAKI TRDSAKITVE QVHGLMSQVI KDILFNSARQ SKKSADDSSD PEPMITS
Arabidopsis Description
CSN5ACOP9 signalosome complex subunit 5a [Source:UniProtKB/Swiss-Prot;Acc:Q8LAZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.