Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0565000-01 | |
| Os04t0445600-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42300.1 | Os02t0565000-01 | AT1G54060.1 | 21798944 |
| AT5G42300.1 | Os04t0445600-00 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P21840_001 | Banana | cytosol | 49.45 | 100.0 |
| EES07961 | Sorghum | cytosol | 79.12 | 98.63 |
| EES16514 | Sorghum | cytosol | 79.12 | 98.63 |
| Zm00001d004936_P002 | Maize | cytosol | 79.12 | 98.63 |
| Bra023834.1-P | Field mustard | cytosol | 78.02 | 97.26 |
| CDY34256 | Canola | cytosol | 78.02 | 97.26 |
| CDY46327 | Canola | cytosol | 78.02 | 97.26 |
| AT3G45180.1 | Thale cress | cytosol | 76.92 | 95.89 |
| AT5G42300.1 | Thale cress | cytosol | 76.92 | 95.89 |
| KRH11137 | Soybean | cytosol | 74.73 | 93.15 |
| KRH21110 | Soybean | cytosol | 74.73 | 93.15 |
| VIT_19s0090g00430.t01 | Wine grape | cytosol | 74.73 | 93.15 |
| Os11t0145400-01 | Rice | cytosol | 82.42 | 90.36 |
| Os02t0628800-01 | Rice | cytosol | 78.02 | 65.14 |
Protein Annotations
| MapMan:19.2.2.4.1 | Gene3D:3.10.20.90 | UniProt:A0A0P0Y727 | ProteinID:BAT15859.1 | GO:GO:0000398 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0031386 | InterPro:IPR000626 | EnsemblPlantsGene:Os12g0143100 | EnsemblPlants:Os12t0143100-01 |
| PFAM:PF00240 | PFscan:PS50053 | PANTHER:PTHR13042 | PANTHER:PTHR13042:SF4 | SUPFAM:SSF54236 | UniParc:UPI000393A36A |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
Similar to GRF zinc finger family protein. (Os12t0143100-01)
Coordinates
chr12:+:2118063..2120604
Molecular Weight (calculated)
10692.6 Da
IEP (calculated)
4.987
GRAVY (calculated)
-0.985
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: SSGGGSRREF EEEEEEEKMI EVVLNDRLGK KVRVKCNEDD TIGDLKKLVA AQTGTRPEKI RIQKWYNIYK DHITLRDYEI HDGMGLELYY N
1: MIEVVLNDRL GKKVRVKCNE EDTIGDLKKL VAAQTGTRPE KIRIQKWYNI YKDHIPLKDY EIHDGMGLEL YYN
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M1U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.