Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
- plastid 1
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P05880_001 | |
| GSMUA_Achr8P23650_001 | |
| GSMUA_Achr9P14340_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42300.1 | GSMUA_Achr3P05880_001 | AT1G54060.1 | 21798944 |
| AT5G42300.1 | GSMUA_Achr8P23650_001 | AT1G54060.1 | 21798944 |
| AT5G42300.1 | GSMUA_Achr9P14340_001 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004936_P002 | Maize | cytosol | 100.0 | 61.64 |
| Bra023834.1-P | Field mustard | cytosol | 100.0 | 61.64 |
| CDY34256 | Canola | cytosol | 100.0 | 61.64 |
| CDY46327 | Canola | cytosol | 100.0 | 61.64 |
| EES07961 | Sorghum | cytosol | 100.0 | 61.64 |
| EES16514 | Sorghum | cytosol | 100.0 | 61.64 |
| HORVU4Hr1G025840.1 | Barley | cytosol | 100.0 | 61.64 |
| TraesCS5D01G141100.1 | Wheat | cytosol | 100.0 | 61.64 |
| TraesCS5B01G132000.1 | Wheat | cytosol | 100.0 | 61.64 |
| TraesCS5A01G132900.1 | Wheat | cytosol | 100.0 | 61.64 |
| TraesCS4D01G128400.1 | Wheat | cytosol | 100.0 | 61.64 |
| TraesCS4B01G133400.1 | Wheat | cytosol | 100.0 | 61.64 |
| TraesCS4A01G185200.1 | Wheat | cytosol | 100.0 | 61.64 |
| OQU85350 | Sorghum | cytosol | 97.78 | 60.27 |
| VIT_19s0090g00430.t01 | Wine grape | cytosol | 97.78 | 60.27 |
| AT3G45180.1 | Thale cress | cytosol | 97.78 | 60.27 |
| KRH21110 | Soybean | cytosol | 97.78 | 60.27 |
| KRH11137 | Soybean | cytosol | 97.78 | 60.27 |
| AT5G42300.1 | Thale cress | cytosol | 97.78 | 60.27 |
| Os11t0145400-01 | Rice | cytosol | 100.0 | 54.22 |
| Os12t0143100-01 | Rice | cytosol | 100.0 | 49.45 |
| Os02t0628800-01 | Rice | cytosol | 97.78 | 40.37 |
| HORVU5Hr1G042600.1 | Barley | mitochondrion | 100.0 | 30.61 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P21840_001 | EnsemblPlants:GSMUA_Achr4T21840_001 | EnsemblPlantsGene:GSMUA_Achr4G21840_001 | Gene3D:3.10.20.90 | InterPro:Ubiquitin-like_domsf | PANTHER:PTHR13042 |
| PANTHER:PTHR13042:SF4 | SUPFAM:SSF54236 | UniParc:UPI0002955228 | UniProt:M0SQZ7 | MapMan:19.2.2.4.1 | : |
Description
Ubiquitin-like protein 5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G21840_001]
Coordinates
chr4:+:22249794..22251038
Molecular Weight (calculated)
5257.4 Da
IEP (calculated)
4.610
GRAVY (calculated)
-0.533
Length
45 amino acids
Sequence
(BLAST)
(BLAST)
1: MIEVVLNDRL GKKVRVKCNE DDTIGDLKKL DYEIHDGMGL ELYYN
1: MIEVVLNDRL GKKVRVKCNE EDTIGDLKKL VAAQTGTRPE KIRIQKWYNI YKDHIPLKDY EIHDGMGLEL YYN
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M1U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.