Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra014370.1-P | |
| Bra030909.1-P | |
| Bra037960.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G42300.1 | Bra014370.1-P | AT1G54060.1 | 21798944 |
| AT5G42300.1 | Bra030909.1-P | AT1G54060.1 | 21798944 |
| AT5G42300.1 | Bra037960.1-P | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34256 | Canola | cytosol | 100.0 | 100.0 |
| CDY46327 | Canola | cytosol | 100.0 | 100.0 |
| GSMUA_Achr4P21840_001 | Banana | cytosol | 61.64 | 100.0 |
| Zm00001d004936_P002 | Maize | cytosol | 98.63 | 98.63 |
| AT5G42300.1 | Thale cress | cytosol | 98.63 | 98.63 |
| EES16514 | Sorghum | cytosol | 98.63 | 98.63 |
| EES07961 | Sorghum | cytosol | 98.63 | 98.63 |
| HORVU4Hr1G025840.1 | Barley | cytosol | 97.26 | 97.26 |
| TraesCS4D01G128400.1 | Wheat | cytosol | 97.26 | 97.26 |
| TraesCS4B01G133400.1 | Wheat | cytosol | 97.26 | 97.26 |
| TraesCS4A01G185200.1 | Wheat | cytosol | 97.26 | 97.26 |
| KRH21110 | Soybean | cytosol | 95.89 | 95.89 |
| KRH11137 | Soybean | cytosol | 95.89 | 95.89 |
| TraesCS5A01G132900.1 | Wheat | cytosol | 95.89 | 95.89 |
| TraesCS5B01G132000.1 | Wheat | cytosol | 95.89 | 95.89 |
| TraesCS5D01G141100.1 | Wheat | cytosol | 95.89 | 95.89 |
| OQU85350 | Sorghum | cytosol | 94.52 | 94.52 |
| VIT_19s0090g00430.t01 | Wine grape | cytosol | 94.52 | 94.52 |
| Os11t0145400-01 | Rice | cytosol | 98.63 | 86.75 |
| Os12t0143100-01 | Rice | cytosol | 97.26 | 78.02 |
| Os02t0628800-01 | Rice | cytosol | 97.26 | 65.14 |
| HORVU5Hr1G042600.1 | Barley | mitochondrion | 95.89 | 47.62 |
Protein Annotations
| EnsemblPlants:Bra023834.1 | EnsemblPlants:Bra023834.1-P | EnsemblPlantsGene:Bra023834 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR13042 | PANTHER:PTHR13042:SF4 |
| PFAM:PF00240 | PFscan:PS50053 | SUPFAM:SSF54236 | UniParc:UPI0001C6A2DD | UniProt:M4E4Y0 | MapMan:19.2.2.4.1 |
Description
AT5G42300 (E=6e-038) UBL5 | UBL5 (UBIQUITIN-LIKE PROTEIN 5)
Coordinates
chrA01:-:20315615..20315836
Molecular Weight (calculated)
8585.4 Da
IEP (calculated)
8.441
GRAVY (calculated)
-0.601
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MIEVVLNDRL GKKVRVKCNE DDTIGDLKKL VAAQTGTRAE KIRIQKWYNI YKDHITLKDY EIHDGMGLEL YYN
1: MIEVVLNDRL GKKVRVKCND DDTIGDLKKL VAAQTGTRAE KIRIQKWYNI YKDHITLKDY EIHDGMGLEL YYN
Arabidopsis Description
UBL5Ubiquitin-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.