Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P21840_001 | Banana | cytosol | 61.64 | 100.0 |
| TraesCS5A01G132900.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS5D01G141100.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS4B01G133400.1 | Wheat | cytosol | 98.63 | 98.63 |
| Bra023834.1-P | Field mustard | cytosol | 95.89 | 95.89 |
| CDY34256 | Canola | cytosol | 95.89 | 95.89 |
| CDY46327 | Canola | cytosol | 95.89 | 95.89 |
| AT3G45180.1 | Thale cress | cytosol | 94.52 | 94.52 |
| AT5G42300.1 | Thale cress | cytosol | 94.52 | 94.52 |
| KRH11137 | Soybean | cytosol | 94.52 | 94.52 |
| KRH21110 | Soybean | cytosol | 94.52 | 94.52 |
| OQU85350 | Sorghum | cytosol | 94.52 | 94.52 |
| VIT_19s0090g00430.t01 | Wine grape | cytosol | 94.52 | 94.52 |
| Os02t0628800-01 | Rice | cytosol | 94.52 | 63.3 |
| HORVU5Hr1G042600.1 | Barley | mitochondrion | 100.0 | 49.66 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G132000.1 | EnsemblPlantsGene:TraesCS5B01G132000 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR13042 | PANTHER:PTHR13042:SF4 | PFAM:PF00240 |
| PFscan:PS50053 | SUPFAM:SSF54236 | TIGR:cd01791 | MapMan:19.2.2.4.1 | : | : |
Description
No Description!
Coordinates
chr5B:+:246180786..246181250
Molecular Weight (calculated)
8527.3 Da
IEP (calculated)
7.506
GRAVY (calculated)
-0.562
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MIEVVLNDRL GKKVRVKCNE DDTIGDLKKL VAAQTGTRPE KIRIQKWYTI YKDHITLGDY EIHDGMGLEL YYN
1: MIEVVLNDRL GKKVRVKCNE EDTIGDLKKL VAAQTGTRPE KIRIQKWYNI YKDHIPLKDY EIHDGMGLEL YYN
Arabidopsis Description
Ubiquitin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M1U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.