Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G198600.1 | Wheat | nucleus, plastid | 85.82 | 96.49 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 95.91 | 95.91 |
| HORVU6Hr1G050140.1 | Barley | nucleus, plastid | 91.35 | 90.91 |
| Os02t0565000-01 | Rice | nucleus | 74.76 | 74.22 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 65.62 | 67.91 |
| KXG30464 | Sorghum | nucleus, plastid | 66.35 | 65.4 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 57.69 | 58.11 |
| Zm00001d010753_P001 | Maize | nucleus | 43.51 | 55.18 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 32.45 | 37.09 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 30.29 | 36.95 |
| CDY33246 | Canola | nucleus | 26.44 | 35.95 |
| KRH06239 | Soybean | nucleus | 31.97 | 35.95 |
| KRH47662 | Soybean | nucleus, plastid | 31.49 | 35.6 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 30.53 | 35.08 |
| CDY61477 | Canola | nucleus, plastid | 25.24 | 34.88 |
| CDY02487 | Canola | nucleus, plastid | 25.72 | 34.74 |
| CDY39099 | Canola | nucleus | 26.44 | 34.7 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 24.76 | 34.22 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 25.48 | 34.19 |
| CDY39101 | Canola | nucleus, plastid | 24.52 | 33.44 |
| Bra021536.1-P | Field mustard | nucleus | 24.28 | 33.01 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 31.97 | 32.92 |
| Solyc03g122030.1.1 | Tomato | nucleus | 28.61 | 32.78 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 29.09 | 32.44 |
| CDX75751 | Canola | nucleus | 28.61 | 31.99 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 24.04 | 31.45 |
| CDY08216 | Canola | nucleus | 24.76 | 31.4 |
| Bra014370.1-P | Field mustard | nucleus | 25.24 | 31.34 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 48.32 | 30.27 |
| AT3G14180.1 | Thale cress | nucleus | 31.25 | 29.35 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 24.52 | 28.9 |
| CDY26148 | Canola | nucleus, plastid | 24.76 | 28.85 |
| AT1G54060.1 | Thale cress | nucleus | 25.96 | 28.2 |
| TraesCS3D01G246100.1 | Wheat | nucleus, plastid | 20.91 | 27.53 |
| CDY51405 | Canola | nucleus | 7.21 | 23.62 |
| Bra030909.1-P | Field mustard | nucleus | 7.21 | 23.44 |
| CDY33093 | Canola | cytosol, plastid | 24.28 | 23.11 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G184500.2 | EnsemblPlantsGene:TraesCS6D01G184500 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF12 | PFAM:PF13837 |
| SEG:seg | MapMan:15.5.20 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:232743759..232745009
Molecular Weight (calculated)
44535.1 Da
IEP (calculated)
5.669
GRAVY (calculated)
-0.853
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDGAASPS PSPSPWRSPS PLPIADPVTV AAVPPGHLAL AIPIHKHGPS SSGGGGGGSR EDAWSDGATS TLIDAWGERF VALGRGSLRH PQWQEVAEVV
101: SSRDGYSKPP KSDVQCKNRI DTLKKKYKVE KAKSDSSWPF FDRLDFLLAP VQKLLGNSGG AAGNSGSSNP SNRSTAPMAP RVNFPQRTRT AFPSSGMKRR
201: LPSPPQASAS SESSDGFPPE PLAEAVNGKR QRLEESANGA DSSDRAQGLR ELAQAIRRLG ETYERVESSK GEHELLMERN RLDAARELED QRVQFFLKMQ
301: MEISKANNGA PLAVPLAAAA MVGNSASTAE DGDSPATADG NGPRRASMAT DDMASSNHHV RYRVKDDRHH HASQRPSYQY NQNNVGAADT GGIGSGSDSG
401: NKEEEEEMED EEEESQ
101: SSRDGYSKPP KSDVQCKNRI DTLKKKYKVE KAKSDSSWPF FDRLDFLLAP VQKLLGNSGG AAGNSGSSNP SNRSTAPMAP RVNFPQRTRT AFPSSGMKRR
201: LPSPPQASAS SESSDGFPPE PLAEAVNGKR QRLEESANGA DSSDRAQGLR ELAQAIRRLG ETYERVESSK GEHELLMERN RLDAARELED QRVQFFLKMQ
301: MEISKANNGA PLAVPLAAAA MVGNSASTAE DGDSPATADG NGPRRASMAT DDMASSNHHV RYRVKDDRHH HASQRPSYQY NQNNVGAADT GGIGSGSDSG
401: NKEEEEEMED EEEESQ
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.