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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G004700.1
HORVU1Hr1G072580.1
HORVU1Hr1G081310.4
HORVU2Hr1G036030.1
HORVU2Hr1G082810.2
HORVU3Hr1G069190.1
HORVU3Hr1G071870.1
HORVU3Hr1G086090.1
HORVU3Hr1G111760.2
HORVU4Hr1G011750.1
HORVU4Hr1G058970.6
HORVU4Hr1G059950.1
HORVU4Hr1G064990.1
HORVU4Hr1G075710.1
HORVU5Hr1G020880.1
HORVU5Hr1G061530.3
HORVU5Hr1G067730.1
HORVU5Hr1G105870.1
HORVU6Hr1G090270.1
HORVU7Hr1G035390.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54060.1 HORVU4Hr1G011750.1 AT1G49410.1 21798944
AT1G54060.1 HORVU5Hr1G067730.1 AT1G57620.1 21798944
AT1G54060.1 HORVU7Hr1G035390.1 AT1G57620.1 21798944
AT1G54060.1 HORVU3Hr1G071870.1 AT2G31490.1 21798944
AT1G54060.1 HORVU4Hr1G064990.1 AT2G32840.1 21798944
AT1G54060.1 HORVU1Hr1G072580.1 AT2G39705.1 21798944
AT1G54060.1 HORVU3Hr1G086090.1 AT2G39705.1 21798944
AT1G54060.1 HORVU4Hr1G059950.1 AT2G39705.1 21798944
AT1G54060.1 HORVU5Hr1G020880.1 AT2G39705.1 21798944
AT1G54060.1 HORVU4Hr1G075710.1 AT3G09630.1 21798944
AT1G54060.1 HORVU5Hr1G105870.1 AT3G09630.1 21798944
AT1G54060.1 HORVU1Hr1G081310.4 AT3G29160.1 21798944
AT1G54060.1 HORVU3Hr1G069190.1 AT3G29160.1 21798944
AT1G54060.1 HORVU2Hr1G036030.1 AT4G17270.1 21798944
AT1G54060.1 HORVU4Hr1G058970.6 AT4G32260.1 21798944
AT1G54060.1 HORVU4Hr1G075710.1 AT5G02870.1 21798944
AT1G54060.1 HORVU5Hr1G105870.1 AT5G02870.1 21798944
AT1G54060.1 HORVU0Hr1G004700.1 AT5G41520.1 21798944
AT1G54060.1 HORVU3Hr1G111760.2 AT5G41520.1 21798944
AT1G54060.1 HORVU5Hr1G061530.3 AT5G60160.1 21798944
AT1G54060.1 HORVU6Hr1G090270.1 AT5G62030.1 21798944
AT3G14180.1 HORVU2Hr1G082810.2 AT3G08780.1 21798944
AT3G14180.1 HORVU4Hr1G075710.1 AT3G09630.1 21798944
AT3G14180.1 HORVU5Hr1G105870.1 AT3G09630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G198600.1 Wheat nucleus, plastid 81.82 92.43
TraesCS6B01G230000.1 Wheat nucleus 91.15 91.59
TraesCS6D01G184500.2 Wheat nucleus 90.91 91.35
Os02t0565000-01 Rice nucleus 73.92 73.75
Zm00001d016876_P001 Maize nucleus, plastid 63.88 66.42
KXG30464 Sorghum nucleus, plastid 65.55 64.93
Zm00001d010753_P001 Maize nucleus 41.87 53.35
HORVU2Hr1G077940.1 Barley cytosol, nucleus, plastid 26.55 49.55
VIT_09s0002g00720.t01 Wine grape nucleus 32.3 37.09
GSMUA_Achr8P23650_001 Banana nucleus 30.14 36.95
CDY33246 Canola nucleus 26.79 36.6
KRH06239 Soybean nucleus 31.58 35.68
CDY39099 Canola nucleus 26.79 35.33
KRH47662 Soybean nucleus, plastid 31.1 35.33
CDY61477 Canola nucleus, plastid 25.36 35.22
Bra037960.1-P Field mustard nucleus, plastid 25.36 35.22
Bra021534.1-P Field mustard nucleus, plastid 25.84 34.84
GSMUA_Achr9P14340_001 Banana nucleus 29.9 34.53
CDY02487 Canola nucleus, plastid 25.36 34.42
CDY39101 Canola nucleus, plastid 24.88 34.1
Bra021536.1-P Field mustard nucleus 24.64 33.66
CDY08216 Canola nucleus 25.84 32.93
GSMUA_Achr3P05880_001 Banana nucleus 31.82 32.92
Bra014370.1-P Field mustard nucleus 26.32 32.84
CDX75751 Canola nucleus 28.95 32.53
Solyc03g122030.1.1 Tomato nucleus 28.23 32.51
PGSC0003DMT400088401 Potato nucleus, plastid 28.47 31.9
HORVU3Hr1G061870.1 Barley nucleus 23.68 31.33
CDY26148 Canola nucleus, plastid 25.84 30.25
AT3G14180.1 Thale cress nucleus 31.34 29.57
Zm00001d042917_P001 Maize golgi, plasma membrane 46.65 29.37
AT1G54060.1 Thale cress nucleus 26.55 28.98
CDY51405 Canola nucleus 7.66 25.2
CDY33093 Canola cytosol, plastid 25.12 24.03
Bra030909.1-P Field mustard nucleus 6.7 21.88
Protein Annotations
EMBL:AK363202EnsemblPlants:HORVU6Hr1G050140.1EnsemblPlantsGene:HORVU6Hr1G050140ncoils:CoilPANTHER:PTHR31307PANTHER:PTHR31307:SF12
PFAM:PF13837SEG:segUniParc:UPI00020067EAUniProt:F2DH35MapMan:15.5.20:
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DH35]
Coordinates
chrchr6H:-:304047637..304049637
Molecular Weight (calculated)
44489.2 Da
IEP (calculated)
6.262
GRAVY (calculated)
-0.758
Length
418 amino acids
Sequence
(BLAST)
001: MDDDGAASPS PSPSQSPSRS PSPLPIADPV TVAAVPPGQL ALAIPIHKHG PSNSGGGGGG GREDAWSDGA TSTLIDAWGE RFVALGRGSL RHPQWQEVAE
101: VVSSRDGYSK PPKSDVQCKN RIDTLKKKYK VEKAKSDSSW PFFDRLDFLL APVQKLGCSS GGAAGNSGSS NPSNRGVAPM APRVNFPQRT RTAFPSSAMK
201: RRLPSLPQAS ASSESSDGFP PEPLAEAVNG KRQSLEESAN GADSSDRAQG LRDLAQAIRR LGQAYERVEF SKGEHELRME RNRLDAAREL EDQRVQFFLK
301: MQMEISKANN GAPLAVALAA AAMVGNSASI AADGNSTAAA DGNGSRRASM ATDVMASSNH HVRYRVKDDR HHHASQRPSY LYDQNNAAAV DGRGTGTGSD
401: SGNKEDEEEI EDEEEESQ
Best Arabidopsis Sequence Match ( AT3G11100.1 )
(BLAST)
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.