Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G244400.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 89.29 | 89.29 |
| TraesCS4B01G070600.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 89.29 | 89.29 |
| TraesCS4D01G069400.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 89.29 | 89.29 |
| EER93786 | Sorghum | mitochondrion | 78.57 | 78.57 |
| Os03t0626200-01 | Rice | mitochondrion | 75.0 | 75.0 |
| GSMUA_Achr9P09740_001 | Banana | mitochondrion | 57.14 | 59.26 |
| KRH24531 | Soybean | cytosol, endoplasmic reticulum, extracellular, mitochondrion | 50.0 | 51.85 |
| KRH29535 | Soybean | endoplasmic reticulum, extracellular, mitochondrion, plastid | 50.0 | 51.85 |
| PGSC0003DMT400064778 | Potato | cytosol, extracellular, golgi, mitochondrion | 46.43 | 48.15 |
| Solyc01g109220.2.1 | Tomato | cytosol, extracellular, golgi, mitochondrion | 46.43 | 48.15 |
| KRH06979 | Soybean | mitochondrion | 41.07 | 46.0 |
| Bra014187.1-P | Field mustard | cytosol | 41.07 | 42.59 |
| VIT_03s0063g01900.t01 | Wine grape | cytosol | 41.07 | 42.59 |
| Zm00001d033301_P001 | Maize | mitochondrion | 69.64 | 41.05 |
| AT1G49410.1 | Thale cress | cytosol, mitochondrion, peroxisome, plastid | 39.29 | 40.74 |
| KRH25119 | Soybean | mitochondrion | 48.21 | 36.0 |
Protein Annotations
| EMBL:AK360428 | EnsemblPlants:HORVU4Hr1G011750.1 | EnsemblPlantsGene:HORVU4Hr1G011750 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005742 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TOM6_plants |
| PANTHER:PTHR35999 | TMHMM:TMhelix | UniParc:UPI0002005AEB | UniProt:F2D966 | MapMan:23.2.1.2 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D966]
Coordinates
chrchr4H:-:36929076..36929874
Molecular Weight (calculated)
6331.0 Da
IEP (calculated)
9.691
GRAVY (calculated)
0.107
Length
56 amino acids
Sequence
(BLAST)
(BLAST)
1: MFLGAVPRKP SKEAAYKELR SHLYIMAGCI AAIRAAPYIL HFLNREPGMT ELKLEL
1: MFPGMFMRKP DKAEALKQLR THVALFGSWV VIIRAAPYVL SYFSDSKDEL KIDF
Arabidopsis Description
TOM6Mitochondrial import receptor subunit TOM6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA7]
SUBAcon: [mitochondrion,peroxisome,plastid,cytosol]
SUBAcon: [mitochondrion,peroxisome,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.