Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014187.1-P | Field mustard | cytosol | 85.19 | 85.19 |
| PGSC0003DMT400064778 | Potato | cytosol, extracellular, golgi, mitochondrion | 75.93 | 75.93 |
| Solyc01g109220.2.1 | Tomato | cytosol, extracellular, golgi, mitochondrion | 75.93 | 75.93 |
| VIT_03s0063g01900.t01 | Wine grape | cytosol | 72.22 | 72.22 |
| KRH29535 | Soybean | endoplasmic reticulum, extracellular, mitochondrion, plastid | 66.67 | 66.67 |
| KRH24531 | Soybean | cytosol, endoplasmic reticulum, extracellular, mitochondrion | 64.81 | 64.81 |
| KRH06979 | Soybean | mitochondrion | 59.26 | 64.0 |
| GSMUA_Achr9P09740_001 | Banana | mitochondrion | 48.15 | 48.15 |
| KRH25119 | Soybean | mitochondrion | 62.96 | 45.33 |
| EER93786 | Sorghum | mitochondrion | 44.44 | 42.86 |
| Os03t0626200-01 | Rice | mitochondrion | 44.44 | 42.86 |
| TraesCS4A01G244400.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 42.59 | 41.07 |
| TraesCS4B01G070600.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 42.59 | 41.07 |
| TraesCS4D01G069400.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 42.59 | 41.07 |
| HORVU4Hr1G011750.1 | Barley | cytosol, mitochondrion | 40.74 | 39.29 |
| Zm00001d033301_P001 | Maize | mitochondrion | 44.44 | 25.26 |
Protein Annotations
| MapMan:23.2.1.2 | EntrezGene:841365 | UniProt:A0A178WJR1 | ProteinID:AAD43159.1 | ProteinID:AEE32427.1 | EMBL:AF324714 |
| EMBL:AF325059 | EMBL:AF327425 | EMBL:AF339720 | ArrayExpress:AT1G49410 | EnsemblPlantsGene:AT1G49410 | RefSeq:AT1G49410 |
| TAIR:AT1G49410 | RefSeq:AT1G49410-TAIR-G | EnsemblPlants:AT1G49410.1 | TAIR:AT1G49410.1 | EMBL:AY037189 | EMBL:BT002672 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005741 |
| GO:GO:0005742 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_564545.1 | ProteinID:OAP18011.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR35999 | UniProt:Q9XIA7 | TMHMM:TMhelix | Symbol:TOM6 |
| InterPro:TOM6_plants | UniParc:UPI00000AC31D | : | : | : | : |
Description
TOM6Mitochondrial import receptor subunit TOM6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA7]
Coordinates
chr1:-:18285306..18287034
Molecular Weight (calculated)
6265.7 Da
IEP (calculated)
9.767
GRAVY (calculated)
0.080
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MFPGMFMRKP DKAEALKQLR THVALFGSWV VIIRAAPYVL SYFSDSKDEL KIDF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.