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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • cytosol 1
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, plastid
MultiLoc:cytosol
TargetP:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G004700.1
HORVU1Hr1G072580.1
HORVU1Hr1G081310.4
HORVU2Hr1G036030.1
HORVU2Hr1G082810.2
HORVU3Hr1G069190.1
HORVU3Hr1G071870.1
HORVU3Hr1G086090.1
HORVU3Hr1G111760.2
HORVU4Hr1G011750.1
HORVU4Hr1G058970.6
HORVU4Hr1G059950.1
HORVU4Hr1G064990.1
HORVU4Hr1G075710.1
HORVU5Hr1G020880.1
HORVU5Hr1G061530.3
HORVU5Hr1G067730.1
HORVU5Hr1G105870.1
HORVU6Hr1G090270.1
HORVU7Hr1G035390.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G54060.1 HORVU4Hr1G011750.1 AT1G49410.1 21798944
AT1G54060.1 HORVU5Hr1G067730.1 AT1G57620.1 21798944
AT1G54060.1 HORVU7Hr1G035390.1 AT1G57620.1 21798944
AT1G54060.1 HORVU3Hr1G071870.1 AT2G31490.1 21798944
AT1G54060.1 HORVU4Hr1G064990.1 AT2G32840.1 21798944
AT1G54060.1 HORVU1Hr1G072580.1 AT2G39705.1 21798944
AT1G54060.1 HORVU3Hr1G086090.1 AT2G39705.1 21798944
AT1G54060.1 HORVU4Hr1G059950.1 AT2G39705.1 21798944
AT1G54060.1 HORVU5Hr1G020880.1 AT2G39705.1 21798944
AT1G54060.1 HORVU4Hr1G075710.1 AT3G09630.1 21798944
AT1G54060.1 HORVU5Hr1G105870.1 AT3G09630.1 21798944
AT1G54060.1 HORVU1Hr1G081310.4 AT3G29160.1 21798944
AT1G54060.1 HORVU3Hr1G069190.1 AT3G29160.1 21798944
AT1G54060.1 HORVU2Hr1G036030.1 AT4G17270.1 21798944
AT1G54060.1 HORVU4Hr1G058970.6 AT4G32260.1 21798944
AT1G54060.1 HORVU4Hr1G075710.1 AT5G02870.1 21798944
AT1G54060.1 HORVU5Hr1G105870.1 AT5G02870.1 21798944
AT1G54060.1 HORVU0Hr1G004700.1 AT5G41520.1 21798944
AT1G54060.1 HORVU3Hr1G111760.2 AT5G41520.1 21798944
AT1G54060.1 HORVU5Hr1G061530.3 AT5G60160.1 21798944
AT1G54060.1 HORVU6Hr1G090270.1 AT5G62030.1 21798944
AT3G14180.1 HORVU2Hr1G082810.2 AT3G08780.1 21798944
AT3G14180.1 HORVU4Hr1G075710.1 AT3G09630.1 21798944
AT3G14180.1 HORVU5Hr1G105870.1 AT3G09630.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G332100.1 Wheat nucleus, plastid 94.2 50.72
TraesCS2D01G311800.1 Wheat nucleus, plastid 93.3 50.61
TraesCS2A01G313300.1 Wheat nucleus, plastid 91.96 49.52
Os04t0445600-00 Rice nucleus 70.54 37.89
Zm00001d025514_P001 Maize nucleus 64.29 36.73
EES12241 Sorghum nucleus 66.07 36.27
Zm00001d003549_P001 Maize nucleus 58.48 34.03
HORVU6Hr1G050140.1 Barley nucleus, plastid 49.55 26.55
CDY51405 Canola nucleus 14.73 25.98
Bra030909.1-P Field mustard nucleus 12.95 22.66
GSMUA_Achr8P23650_001 Banana nucleus 22.32 14.66
VIT_09s0002g00720.t01 Wine grape nucleus 23.21 14.29
CDY39101 Canola nucleus, plastid 18.75 13.77
Bra021536.1-P Field mustard nucleus 18.75 13.73
CDY33246 Canola nucleus 18.75 13.73
KRH47662 Soybean nucleus, plastid 22.32 13.59
KRH06239 Soybean nucleus 22.32 13.51
PGSC0003DMT400088401 Potato nucleus, plastid 22.32 13.4
Solyc03g122030.1.1 Tomato nucleus 21.43 13.22
CDY39099 Canola nucleus 17.86 12.62
HORVU3Hr1G061870.1 Barley nucleus 17.41 12.34
CDX75751 Canola nucleus 20.09 12.1
Bra021534.1-P Field mustard nucleus, plastid 16.52 11.94
GSMUA_Achr9P14340_001 Banana nucleus 19.2 11.88
AT3G14180.1 Thale cress nucleus 23.21 11.74
GSMUA_Achr3P05880_001 Banana nucleus 20.98 11.63
Bra037960.1-P Field mustard nucleus, plastid 14.73 10.96
CDY08216 Canola nucleus 15.18 10.37
CDY61477 Canola nucleus, plastid 13.84 10.3
Bra014370.1-P Field mustard nucleus 15.18 10.15
CDY26148 Canola nucleus, plastid 15.62 9.8
CDY02487 Canola nucleus, plastid 13.39 9.74
AT1G54060.1 Thale cress nucleus 15.62 9.14
CDY33093 Canola cytosol, plastid 15.62 8.01
Protein Annotations
EnsemblPlants:HORVU2Hr1G077940.1EnsemblPlantsGene:HORVU2Hr1G077940ncoils:CoilPANTHER:PTHR31307PANTHER:PTHR31307:SF12SEG:seg
UniParc:UPI000B488EA1UniProt:A0A287IJI8MapMan:15.5.20:::
Description
No Description!
Coordinates
chrchr2H:-:564454408..564455821
Molecular Weight (calculated)
24770.9 Da
IEP (calculated)
5.587
GRAVY (calculated)
-1.262
Length
224 amino acids
Sequence
(BLAST)
001: LMPATAPVKR RAPSPEMSAS SESSDGFPPE PALPPANGKR RRTDEGRVDG LSGGDRSQGM RELAQAIRRL GEAYERVETA KLEQAAEMER QRLDFARELE
101: SQRVQFFLNT QKELSQGKNH ISPAAAASHS QAGATTVGGS SRRMASGPDS TSRRMSSFHD ARTSSNHHDR YRASDGSRHH HRPALRPHYQ YHENNMADSA
201: AASDGEQSDD EEEEEDDDNE EESQ
Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)
001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN
Arabidopsis Description
ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.