CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69854
CDX73400
CDX73989
CDX76117
CDX77081
CDX96983
CDY02916
CDY07934
CDY08733
CDY22192
CDY27973
CDY28668
CDY28862
CDY32850
CDY36008
CDY36508
CDY37505
CDY40204
CDY41301
CDY41596
CDY44721

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14180.1	CDX77081	AT3G01690.1	21798944
AT3G14180.1	CDY28668	AT3G01690.1	21798944
AT3G14180.1	CDY28862	AT3G01690.1	21798944
AT3G14180.1	CDY32850	AT3G01690.1	21798944
AT3G14180.1	CDY37505	AT3G01690.1	21798944
AT3G14180.1	CDY27973	AT3G08780.1	21798944
AT3G14180.1	CDY36008	AT3G08780.1	21798944
AT3G14180.1	CDX73989	AT3G09630.1	21798944
AT3G14180.1	CDY07934	AT3G09630.1	21798944
AT3G14180.1	CDY22192	AT3G09630.1	21798944
AT3G14180.1	CDY41301	AT3G09630.1	21798944
AT3G14180.1	CDY41596	AT3G09630.1	21798944
AT3G14180.1	CDY44721	AT3G09630.1	21798944
AT3G14180.1	CDX73400	AT3G55150.1	21798944
AT3G14180.1	CDX76117	AT3G55150.1	21798944
AT3G14180.1	CDY02916	AT3G55150.1	21798944
AT3G14180.1	CDY40204	AT3G55150.1	21798944
AT3G14180.1	CDX69854	AT5G10210.1	21798944
AT3G14180.1	CDX96983	AT5G10210.1	21798944
AT3G14180.1	CDY08733	AT5G67620.1	21798944
AT3G14180.1	CDY36508	AT5G67620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39101	Canola	nucleus, plastid	79.74	80.0
CDY39099	Canola	nucleus	82.35	79.5
CDX75751	Canola	nucleus	66.67	54.84
AT3G14180.1	Thale cress	nucleus	75.16	51.92
VIT_09s0002g00720.t01	Wine grape	nucleus	50.33	42.31
CDY61477	Canola	nucleus, plastid	41.5	42.19
KRH06239	Soybean	nucleus	50.65	41.89
CDY08216	Canola	nucleus	44.77	41.77
KRH47662	Soybean	nucleus, plastid	50.0	41.58
Solyc03g122030.1.1	Tomato	nucleus	47.39	39.94
CDY02487	Canola	nucleus, plastid	40.2	39.94
PGSC0003DMT400088401	Potato	nucleus, plastid	48.37	39.68
CDY36316	Canola	nucleus	32.03	38.89
CDY26148	Canola	nucleus, plastid	44.12	37.82
CDY00995	Canola	nucleus	31.05	37.11
CDY51405	Canola	nucleus	15.36	37.01
GSMUA_Achr8P23650_001	Banana	nucleus	37.91	34.02
CDX70144	Canola	cytosol	27.12	33.2
GSMUA_Achr9P14340_001	Banana	nucleus	39.22	33.15
CDX71939	Canola	nucleus, plastid	29.74	30.23
CDX98311	Canola	nucleus	30.39	29.81
GSMUA_Achr3P05880_001	Banana	nucleus	39.22	29.7
TraesCS6A01G198600.1	Wheat	nucleus, plastid	35.29	29.19
CDX67755	Canola	nucleus	30.07	29.11
Zm00001d003549_P001	Maize	nucleus	36.6	29.09
TraesCS2D01G311800.1	Wheat	nucleus, plastid	38.89	28.81
Os04t0445600-00	Rice	nucleus	39.22	28.78
TraesCS2B01G332100.1	Wheat	nucleus, plastid	38.89	28.61
TraesCS2A01G313300.1	Wheat	nucleus, plastid	38.89	28.61
Zm00001d025514_P001	Maize	nucleus	36.6	28.57
EES12241	Sorghum	nucleus	37.58	28.19
CDX98849	Canola	cytosol	27.78	27.69
Zm00001d016876_P001	Maize	nucleus, plastid	35.95	27.36
CDY33093	Canola	cytosol, plastid	38.89	27.23
HORVU6Hr1G050140.1	Barley	nucleus, plastid	36.6	26.79
Os02t0565000-01	Rice	nucleus	36.6	26.73
TraesCS6D01G184500.2	Wheat	nucleus	35.95	26.44
TraesCS6B01G230000.1	Wheat	nucleus	35.62	26.2
KXG30464	Sorghum	nucleus, plastid	34.97	25.36
Zm00001d010753_P001	Maize	nucleus	26.14	24.39
CDX93016	Canola	nucleus	14.38	22.22
CDX94808	Canola	nucleus	19.93	19.0
HORVU2Hr1G077940.1	Barley	cytosol, nucleus, plastid	13.73	18.75
Zm00001d042917_P001	Maize	golgi, plasma membrane	29.41	13.55

Protein Annotations

EnsemblPlants:CDY33246	EnsemblPlantsGene:GSBRNA2T00054008001	ncoils:Coil	PANTHER:PTHR31307	PFAM:PF13837	ProteinID:CDY33246
ProteinID:CDY33246.1	SEG:seg	UniParc:UPI0004EDFE93	UniProt:A0A078H5U5	MapMan:15.5.20	:

Description

BnaC01g37190DBnaC01g37190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5U5]

Coordinates

chrLK032309:+:348043..348963

Molecular Weight (calculated)

34259.3 Da

IEP (calculated)

10.069

GRAVY (calculated)

-0.975

Length

306 amino acids

Sequence
(BLAST)

001: MADDDDQIRS HSDSPDPSSS PPPSGKLTVT VASPAPPQKD PDASPLALLP IRPTGGGGRE DCWSEKATGV LIDAWGEIHL ELSRGNLKQK HWEEVAERVR
101: SKEDNGKAPK TDVQCKNRID TVKKKYKQEK LTSGGSSSSS WVFFDKLDRL IGSTAKISSG GSRGLNLYHQ QGKAETPRFG GKARVTSASF SESKRWPLRR
201: KRNVSDSDSV FEAGVSEDSG DSLPPPPPPL SKRKQGGRNK WRELSRAIMR FGEAYEEIEN AKLRQVVEME KERLKFLKEL EMQRMQFFVK IQLELSRQRE
301: ENGKQQ

Best Arabidopsis Sequence Match ( AT3G14180.1 )
(BLAST)

001: MEDDEDIRSQ GSDSPDPSSS PPAGRITVTV ASAGPPSYSL TPPGNSSQKD PDALALALLP IQASGGGNNS SGRPTGGGGR EDCWSEAATA VLIDAWGERY
101: LELSRGNLKQ KHWKEVAEIV SSREDYGKIP KTDIQCKNRI DTVKKKYKQE KVRIANGGGR SRWVFFDKLD RLIGSTAKIP TATSGVSGPV GGLHKIPMGI
201: PMGSRSNLYH QQAKAATPPF NNLDRLIGAT ARVSAASFGG SGGGGGGGSV NVPMGIPMSS RSAPFGQQGR TLPQQGRTLP QQQQQGMMVK RCSESKRWRF
301: RKRNASDSDS ESEAAMSDDS GDSLPPPPLS KRMKTEEKKK QDGDGVGNKW RELTRAIMRF GEAYEQTENA KLQQVVEMEK ERMKFLKELE LQRMQFFVKT
401: QLEISQLKQQ HGRRMGNTSN DHHHSRKNNI NAIVNNNNDL GNN

Arabidopsis Description

ASIL2ASIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178V8Z7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.