Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003346.1-P | Field mustard | nucleus | 94.94 | 98.04 |
| CDX98311 | Canola | nucleus | 93.99 | 95.19 |
| CDX71939 | Canola | nucleus, plastid | 78.8 | 82.72 |
| AT3G58630.1 | Thale cress | nucleus | 81.65 | 80.37 |
| GSMUA_Achr1P11500_001 | Banana | nucleus | 38.61 | 49.39 |
| GSMUA_Achr6P26840_001 | Banana | cytosol, mitochondrion, nucleus | 40.19 | 48.85 |
| KRH27047 | Soybean | nucleus | 46.52 | 47.88 |
| GSMUA_Achr5P09160_001 | Banana | nucleus | 37.97 | 47.62 |
| KRH22283 | Soybean | nucleus | 45.57 | 47.06 |
| GSMUA_Achr9P06410_001 | Banana | nucleus | 39.87 | 46.67 |
| GSMUA_Achr1P27460_001 | Banana | nucleus | 36.08 | 44.71 |
| Solyc12g010890.1.1 | Tomato | nucleus | 44.3 | 43.34 |
| VIT_12s0028g02150.t01 | Wine grape | cytosol | 42.72 | 38.9 |
| CDX70144 | Canola | cytosol | 30.38 | 38.4 |
| CDY00995 | Canola | nucleus | 31.01 | 38.28 |
| CDY36316 | Canola | nucleus | 30.06 | 37.7 |
| HORVU3Hr1G061870.1 | Barley | nucleus | 37.34 | 37.34 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 37.34 | 36.99 |
| TraesCS3D01G271000.1 | Wheat | nucleus | 37.03 | 36.79 |
| TraesCS3A01G271400.1 | Wheat | nucleus | 37.03 | 36.79 |
| Os05t0560600-01 | Rice | nucleus | 39.87 | 36.42 |
| PGSC0003DMT400020194 | Potato | plastid | 43.35 | 35.77 |
| Zm00001d011571_P001 | Maize | cytosol | 35.44 | 35.56 |
| EES03423 | Sorghum | cytosol | 35.44 | 35.33 |
| Zm00001d043902_P001 | Maize | nucleus | 35.44 | 35.22 |
| EES18672 | Sorghum | nucleus | 38.61 | 35.16 |
| TraesCS1A01G392300.1 | Wheat | nucleus | 39.24 | 35.13 |
| TraesCS1D01G400500.1 | Wheat | nucleus | 38.92 | 34.84 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 38.92 | 34.55 |
| Zm00001d038994_P001 | Maize | cytosol | 37.34 | 34.4 |
| Os01t0674000-01 | Rice | nucleus | 36.08 | 34.34 |
| PGSC0003DMT400052607 | Potato | nucleus, plastid | 41.77 | 33.25 |
| CDX98849 | Canola | cytosol | 31.01 | 31.92 |
| Solyc07g055100.2.1 | Tomato | nucleus, plastid | 42.41 | 31.24 |
| CDY33246 | Canola | nucleus | 29.11 | 30.07 |
| CDY39099 | Canola | nucleus | 29.75 | 29.65 |
| CDY61477 | Canola | nucleus, plastid | 28.16 | 29.57 |
| CDY39101 | Canola | nucleus, plastid | 28.48 | 29.51 |
| Zm00001d030350_P001 | Maize | nucleus | 19.3 | 29.05 |
| CDY02487 | Canola | nucleus, plastid | 28.16 | 28.9 |
| CDY51405 | Canola | nucleus | 11.39 | 28.35 |
| CDY08216 | Canola | nucleus | 28.8 | 27.74 |
| CDX75751 | Canola | nucleus | 30.38 | 25.81 |
| CDY26148 | Canola | nucleus, plastid | 28.8 | 25.49 |
| CDX93016 | Canola | nucleus | 15.51 | 24.75 |
| CDY33093 | Canola | cytosol, plastid | 28.16 | 20.37 |
| CDX94808 | Canola | nucleus | 20.57 | 20.25 |
Protein Annotations
| EnsemblPlants:CDX67755 | EnsemblPlantsGene:GSBRNA2T00098943001 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF2 | PFAM:PF13837 |
| ProteinID:CDX67755 | ProteinID:CDX67755.1 | SEG:seg | UniParc:UPI0004EEA87E | MapMan:15.5.20 | : |
Description
BnaA07g17950D
Coordinates
chrLK031787:-:2098709..2100482
Molecular Weight (calculated)
35735.9 Da
IEP (calculated)
9.894
GRAVY (calculated)
-0.819
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDAVNDSFS PGSSRPSPSM LSREDYWSEE ATFTLIQAWG RRYVDLSRGG LRQKHWQEVA NAVNDRHFNT GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK
101: VEKARVSSES YVSAWPFFSD LDELLRETFP ATSSAGPDNS QRPSPSLPIV PVPVAPRSAI SRRPAIMSLG GDNLLGFRGN LNAFAAAAAA AASPAYEDDS
201: NGSRSRSSGG NNRKRERERE VEIEIEEKKG YKEVAEAIER FGKIYEKVEE RKRKEMVELE KQRMRFAKEL ECHRMQLFTE MQVRLHKLRR SSGSNGPTSS
301: ANAALEYGMM DFPSYF
101: VEKARVSSES YVSAWPFFSD LDELLRETFP ATSSAGPDNS QRPSPSLPIV PVPVAPRSAI SRRPAIMSLG GDNLLGFRGN LNAFAAAAAA AASPAYEDDS
201: NGSRSRSSGG NNRKRERERE VEIEIEEKKG YKEVAEAIER FGKIYEKVEE RKRKEMVELE KQRMRFAKEL ECHRMQLFTE MQVRLHKLRR SSGSNGPTSS
301: ANAALEYGMM DFPSYF
001: MDTVNDSFSP GSSRPSPATL SREDCWSEEA TFTLIQAWGN RYVDLSRGNL RQKHWQEVAN AVNDRHYNTG RNVSAAKSQP YRTDVQCKNR IDTLKKKYKV
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
101: EKARVSESNP GAYISPWPFF SALDDLLRES FPTSSNPDST DNIPHQRLSL PMSINPVPVA PRSAIPRRPA TSPAIIPHAG DDLLGFRGNL NAFAAAAAAA
201: ACPASEDDSE GSRSRSSGRS GSNKKRERKI EKKQGYKEVA DAIERLGQIY ERVEEKKRKE MVELEKQRMR FAKELECHRM QLFTEMQVRL HKLRRTSGSK
301: GPTSSASAAL DYGMMDFPSY F
Arabidopsis Description
Sequence-specific DNA binding transcription factor [Source:UniProtKB/TrEMBL;Acc:Q8GXR6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.